Clarias gariepinus (North African catfish): 128542614
Help
Entry
128542614 CDS
T10780
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
128542614
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cgar01009
]
128542614
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cgar04515
]
128542614
Protein phosphatases and associated proteins [BR:
cgar01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
128542614
Cell adhesion molecules [BR:
cgar04515
]
Cadherins
Protocadherins
128542614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Adeno_E3_CR2
CD34_antigen
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
128542614
NCBI-ProteinID:
XP_053368519
LinkDB
All DBs
Position
15:complement(27459095..27463881)
Genome browser
AA seq
885 aa
AA seq
DB search
MCKTRKGFCLAREGKFWVFWILLLYTSPLSCFSKFSHLVYKIKEGLPNGILIGSIGEDLN
LDFSIDPPRLFHLELRQSNSQYVNLSYTTGELFTSAVEIDRETLCADSYEGQGCTISLDV
IILPQQYFQLVKIKIIIEDINDNKPHFPVDEISVSVPENAQVNARFVVEQSAVDPDIGIY
GVQTYWLANDFGVFTLDVEQNEGGELTPFLIITGPLDRETKAEYLTEFIAEDGGSPPFLG
STTLRIIITDVNDNCPKFAETQVNVTLSANTTKGSQLARLYAFDPDHGTNAQITYSFSKR
VTRETRNLFHLDEITGVIKLAEKIDSDTGKLYKMVVLANGPACIPDIATVTVKVVKLVSG
PPALIPRYIASEKDGVVSLSESEPPFTPIAFFTIKNADPRKKVTCTLQGHGPFRLLPYKN
LKNEFLLETTAQLDYEDQKYYELTVVVRNSDGEVVETQVKVHILDDNDNAPIFKQSVIDI
KIEENNAPDTFLAKFQATDKDSGNRGEILYLLGSDAPPIFHLDRLTGVLTVTTSFDREEK
ETYRFIVRAVDGGTPRKESIATVLITILDRNDNSPRFINKDFTFFVPENFPGFGEIGVLS
VTDADAGENGWVALSIINGSDIFVIDTGRGALRAKTTLDREQQGTYYLWIEAVDGGKPAL
SSVTMVTVLLLDVNDNPPVVLFPQSNQSYLLVLPSTLPGSSVTEVYAVDRDTGMNAVIAY
SIIKRRGGEPGSFDIDPDTGNITLRKVLSDRGLYSLLVKVSDHGQPEPLHSTVMVNLFVN
ETISNETYIQSLLTREADIGIEEVRPPIRLAQGPEYSELFPCKLLLIALSTTCMGLLLIV
VSLTAYICCKRQENHKKKRLEVEIPLKIDSDRQAMDRKLMEISNI
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgtgcaagacacgcaaaggtttctgccttgctagggaaggaaagttctgggttttttgg
attctcctgctctacacaagtcctctatcctgcttttcaaagttcagccatcttgtctat
aagataaaggaaggcttacccaatgggattctcatcgggtccattggagaagatttaaat
ttggatttctccatcgaccccccgcgtttgttccatctggaattaaggcagagcaattct
cagtatgtcaatctaagttatacaaccggggagcttttcacttctgctgtggaaattgac
cgagagactctttgtgcagattcctatgagggtcaaggatgcactatttctctggacgtg
atcattctgccacagcagtacttccagctagttaagatcaaaatcatcatcgaagacatt
aatgacaataagccacattttccagtggacgagatcagcgtgtctgtgccggaaaatgca
caggtcaacgctcggtttgtggtagagcaatctgctgtagacccggatataggcatttat
ggggttcagacatattggctggctaatgactttggagttttcacgctggacgttgagcaa
aacgaaggaggagaactgacacctttcctgatcattactggacctttggatagggaaacg
aaagcggaatatttaactgaattcatcgctgaggacgggggatctcctccttttttgggc
agtaccactcttagaattatcatcacagatgtaaatgacaactgccccaaatttgcagag
actcaggtgaatgtgacactttctgcaaacaccacaaagggctcacagttggcccgtctc
tatgcctttgacccagatcatggtaccaatgctcagattacttactcgttcagtaaacgg
gtcactcgagaaactaggaacctttttcacttggatgaaatcacaggggtcatcaagcta
gccgaaaagatcgattcggacactggaaagctgtacaagatggttgtgctggctaacggg
ccagcttgcatacctgatattgctaccgtcactgtgaaggttgttaaactggtttcggga
ccaccagccctcataccccgttacattgcttcagagaaagatggtgtggtttctctgagt
gaatcagagccaccctttacacctattgctttcttcaccataaagaatgcagacccaagg
aagaaggtgacatgtactttgcaaggtcatggacccttcaggcttttgccatataaaaat
ttgaaaaatgagttcttgctggagactactgctcagctggattatgaagatcaaaaatat
tatgaactcactgtggtggtcagaaactcagatggagaagttgttgagacacaggtgaag
gtgcacatattggatgataatgacaatgctcccatatttaaacagtcagttattgatata
aagattgaggagaacaatgctccggacacattcctcgctaaattccaagccactgacaag
gacagtggtaacaggggtgagatactctatcttcttgggtcagatgctcccccaatcttc
caccttgaccggttgactggggtcttgaccgtgaccacatcttttgacagagaggagaaa
gagacctaccggtttatagtccgagcagttgatggtggcacgccaaggaaggagtcaatc
gctacggttttaatcaccatcctggatcgcaacgataacagtcctcgtttcatcaacaaa
gatttcaccttcttcgtcccagagaacttcccaggatttggggaaattggagtcctctct
gtgaccgatgcggatgccggggaaaatggctgggtggcgctatcaatcatcaatggaagt
gacatatttgttattgacacaggacggggtgcactgagagcgaaaaccacattggaccgg
gagcagcaaggaacatactatctctggattgaagctgtggacgggggtaagcctgcactc
tcgtccgtcaccatggttactgttttgctgttggacgtcaacgacaacccgccagtggtg
ctgtttccccagtccaaccagtcctacttgctggttcttcccagtacacttccaggatcg
tccgtcacagaggtctacgctgtggatagggacactggcatgaatgccgtcattgcctac
agcatcatcaagcgtaggggcggcgaaccaggctcgtttgacatagacccagatactgga
aacatcaccctcaggaaggtcttgagtgaccggggcctgtacagcctgctggtcaaagtc
agtgaccatggccaacctgaaccacttcactccactgttatggtcaacctgtttgtcaat
gaaaccatcagcaacgagacatacattcagagcctcctgaccagagaggcagatatcggg
attgaggaggtcaggccaccaatcaggcttgctcaggggccagagtatagtgaactcttt
ccctgcaagctgctacttattgctcttagcaccacctgtatggggcttctccttatagtg
gtgtcactgaccgcatacatatgctgtaagaggcaagaaaatcataaaaagaagagatta
gaagtagagatccctttaaaaatagacagtgacagacaagccatggacaggaagcttatg
gaaatttctaacatatga
DBGET
integrated database retrieval system
