Clarias gariepinus (North African catfish): 128542717
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Entry
128542717 CDS
T10780
Symbol
si:ch73-63e15.2
Name
(RefSeq) protein strawberry notch homolog 2 isoform X1
KO
K26273
protein strawberry notch
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cgar03036
]
128542717 (si:ch73-63e15.2)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
128542717 (si:ch73-63e15.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
SBNO
ResIII
Ribosomal_uL24m-like
Helicase_C
DEAD
Motif
Other DBs
NCBI-GeneID:
128542717
NCBI-ProteinID:
XP_053368663
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All DBs
Position
15:14786807..14841855
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AA seq
1427 aa
AA seq
DB search
MLFFSASSAMEGQNCSHTEGTQMDTGMLGLASSAMESPLCTPWTFSQVSYPHWPAQSGSQ
QHCSSSTSEMHMEIFNHSAFSDFPDMLGFSCDEDIFQDLCIDDLSNNSLFSSSDSLSHVE
DSLATVPTIWDINTPAQIQELHSTRFQGLNSLEDITAIISTPPLRSLQQPEEEEEIEDEE
TEELGHVDTYADYKPSKSTIGNSHPDRVVETNTLSSVPPPDISYTLSIPNAIIDSSMLSA
LQLEAIIYACQQHEVILQNKQRAGFLIGDGAGVGKGRTVAGIILESYLKGRRKALWFSVS
NDLKYDAERDLQDIGAPNILVHALNKIKYGDTATSEGVLFATYSALIGESQAGGQHRTRL
KQILDWCGPDFDGVIVFDECHKAKNATSTKMGKAVLHLQNKLPLARVVYASATGASEPKN
MIYMSRLGIWGEGTQFKTFDDFLHAIEKRGVGAMEIVAMDMKVSGMYIARQLSFSGVSFR
IEEISLDDDFTLVYNKAAKLWAEALAVFTQAADLLGMVSRKSLWGQFWSSHQRFFKYLCI
ASKVRCLVELAKKELEAGKCVVIGLQSTGEARTREVLDENEGHLDKFVSAAEGVFQSLVQ
KHFPSEKQRREKGATSKRKRKAKGRHPKCSKQGADAKSVINISDDSSTETDGVESDSNSS
PDSLQDNTDDVIFITQTNCHAARLEEMKQSLLNKISELGKELPLNTLDELIDKFGGPEKV
AEMTGRKGRVVRRPDGSVRYESRAEQGHTIDHINIKEKDRFMNGEKLVAIISEAASSGIS
LQADRRVKNQCRRVHMTLELPWSADRAIQQFGRTHRSNQVTAPEYIFLISELAGERRFAS
IVAKRLESLGALTHGDRRATESRDLSKYNFENKYGNRALEKITKAILGHIESKVAPPKGY
PGGDAMFFRDMKQGMMDVGIFCKEARFGINSEKDCTITKFLNRILGLEVHKQNSLFQYFS
DNFDYLIEKDKKEGKYDMGILDLAPGNDEISNETQEKFQTPGNPQEGQVVLYKISVDRGM
PWEEALKKAHTLSNPDEGFYISYKLRGSHPCVLLAEQGRGHNMTVYKPNVGKQNQPENLD
NIQKKYRKVTPEEAKESWENQFAFSLSKCSHANWTGRCKKVDEGQECLQGMRLRQYHVLC
GALLCVWKRVADVVADVTSSSILQIVRLKTREHKQVGIKVPENCVAQVRDELDRIDKEVK
RKRQEKELKAREQQVAEQHRRMLEERHSVFYSQPPQLSSLTNLSSLYNDSLFASFPSHSS
KEGILDLRVPGSSRLSTHSMGTDTLSAPVSDFSMETFPQPEQQQQQQSHSALRDSARQEL
LDFLNSALPSSSDSLHTAIPNTTSYFSNANIHHSSSSSSLFSPSLTPSSSSSSLFSSLSP
SDQHPFANCSDDTAINAKEVLSSMLRSGTDSRQSVIHFRVPESEHLS
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgctgtttttctctgcttcctctgccatggaagggcagaactgttctcacacggaggga
acgcagatggataccggaatgttgggtttggcctcttctgctatggagagtccactttgc
acaccatggactttctcacaggtgtcttacccgcattggcctgcccagtctgggagtcag
caacactgttccagcagcacttcagagatgcacatggaaattttcaaccattccgctttt
tcagattttcctgatatgttaggtttttcctgcgatgaagacatctttcaggacctatgt
atagatgatctgtccaacaactcgctattctcttcttctgattccctgtcccatgtagaa
gacagcttggcaactgtgcctaccatatgggacatcaatacaccagcacagattcaggag
ctgcattccacccggtttcaaggtttaaacagtttagaagatatcacagcgataatcagc
acaccgcctttgaggagccttcagcaaccagaggaggaagaggaaatcgaggatgaggag
acagaagagttaggccatgtggacacctacgctgactacaaaccttcaaaatccactata
ggaaactcacaccctgaccgtgttgtggagaccaacactctttcaagcgtccctccacct
gacatcagctacaccctctctattcccaatgcaatcatagatagcagtatgctctctgcc
ctgcagctcgaggctatcatctatgcctgccaacaacacgaggtgatcctacagaacaag
cagagagccggttttttgataggagatggagctggagtgggaaaaggtcgcacagtggcc
ggaatcatccttgagagctacctaaagggaagaagaaaagcactttggttcagtgtttca
aatgacctcaaatatgatgctgaacgagatcttcaggacattggtgctcctaatattcta
gtacatgccttaaataagataaagtatggggacaccgctacctcagaaggggttctgttt
gctacctactcggccctgatcggcgagagccaggcaggaggccagcaccgcactagactc
aagcagatccttgattggtgcggacctgactttgatggagttatcgtgtttgatgaatgc
cataaggcaaaaaatgccacgtccaccaaaatgggtaaagctgtgctgcatctacagaac
aagcttcctctggctagggtggtctacgccagtgcgacaggtgcatctgagccaaagaac
atgatctacatgagtcgtctgggtatctggggagaaggaacccagtttaaaacctttgat
gactttctccacgctatagaaaagagaggtgtgggtgccatggagattgtagcaatggac
atgaaggtgagtgggatgtacattgcacggcaactgagcttctcaggggtgtccttccgc
attgaagagatcagcttggacgacgacttcacacttgtttacaacaaagctgccaaactg
tgggcagaagccttggctgtgttcactcaggcagctgatcttcttggtatggtgtccagg
aagtctctgtggggtcagttttggtcttcccaccagcgctttttcaaatacctctgcatt
gcctccaaggttcgctgtttggtcgaactggctaagaaggagctggaagctggcaagtgt
gttgtgattggtttacaatccacgggtgaagcacggacccgagaagttcttgatgaaaac
gagggacacctcgacaaatttgtttctgctgcagagggtgtgttccagtccctggtccaa
aagcatttcccttcagagaaacagagaagagaaaaaggagcaaccagcaagaggaaacgt
aaagccaaaggtcggcacccaaagtgctccaagcagggtgcggatgccaaaagcgtcatt
aacatcagcgatgacagcagcacagagactgatggagtggagagcgactccaactcgtct
ccagattcactacaggacaatactgatgatgtcatcttcattacacaaaccaactgtcat
gctgcacgtttggaggagatgaagcaaagccttcttaataaaatctctgagcttggaaag
gaactacctctgaacacactggatgagctcatagataaatttggaggtccggaaaaggtt
gcagagatgactggacggaagggccgagtggtgcgccgaccagatgggagcgtgcgctac
gagtcccgtgctgagcagggccacaccattgaccacatcaacattaaagaaaaggatcgc
ttcatgaacggagagaagctggtggctataatctctgaggcagccagttcaggcatctct
ctgcaggcagacagacgggtgaagaaccagtgtaggcgagtccacatgaccctggagttg
ccctggagtgctgaccgggccattcagcagtttggtcgcactcaccgctccaaccaagtc
acagcaccggagtacatcttcctgatctctgaactggccggcgaaagacgcttcgcttct
attgtggctaagaggctggagagtctgggagcactgacccacggggaccgacgagcaact
gagtctagagacttgagcaagtacaattttgaaaataaatatggcaacagggctttagag
aagatcaccaaggccattttgggtcatatagaaagtaaggtggcacctcccaaaggctat
ccaggaggtgatgccatgttcttcagagacatgaagcaaggtatgatggatgtcggtatt
ttctgcaaggaggctcgctttggcatcaactctgagaaagactgcaccattacaaagttc
ctcaatcgtattttgggtttagaagtgcacaagcagaattctttatttcagtacttcagt
gacaattttgactacctgattgaaaaggacaaaaaggaaggcaaatatgatatggggatc
ttggatctggctcctggtaatgatgagatctctaacgagactcaagaaaagtttcagact
ccaggcaacccacaggaaggccaagtagttctctataagatcagtgtggacagaggtatg
ccctgggaagaggctctcaaaaaggctcacacactcagcaatcctgatgaaggcttctac
atctcatacaagctaagagggagtcacccatgtgttcttctggccgaacagggcagaggt
cacaacatgaccgtctacaagcccaatgttggcaaacaaaaccaaccagagaacctggac
aacatccaaaagaagtaccgcaaggtgactccagaggaggcgaaggaaagctgggagaat
cagtttgctttttccttaagtaaatgtagccatgccaactggaccgggaggtgcaaaaag
gttgacgagggccaggaatgtttgcagggtatgcgcttacggcagtaccatgtcctttgc
ggtgctcttctgtgtgtgtggaagcgtgtagctgacgtggtggcagacgtcaccagctcc
agcatcctgcaaatagtacgcctcaaaaccagggaacacaaacaagtgggtattaaggtc
ccagagaactgcgtggctcaagtgcgagatgagttggaccgtatagataaagaggtgaaa
aggaagcgccaggagaaagagctcaaggctagagagcagcaggtggctgaacagcaccgg
aggatgttagaagaacgtcattctgtgttctactcccaacctccccagctctccagcctg
accaacctgtccagcctttacaatgatagcttatttgcttcttttccatcccactcctcc
aaagagggcattctggacctgagggtgcccggctcttctcgcctttctacacacagcatg
ggaacagacacgctctctgcgcctgtttcagatttcagcatggagactttcccacagccg
gagcagcagcagcagcagcagagtcactctgctctgagagattccgcacgacaggaattg
ttggacttcctcaactctgcacttccttcttcatcagactctttacacactgccatacct
aacacgacaagctacttctccaacgccaacatccatcattcctcctcatcatcgtccctt
ttctctccctcactcacaccatcgtcttcttcttcttcactcttttcctccctgtcgcca
tcagaccagcacccatttgcaaactgcagcgatgacacagccattaacgccaaagaggtg
ctgagcagtatgctaaggagtggcacagactcccgccagtctgtcatccacttcagagta
ccagagtcagagcacctgtcctaa
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