Clarias gariepinus (North African catfish): 128542874
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Entry
128542874 CDS
T10780
Symbol
tmc6b
Name
(RefSeq) transmembrane channel-like protein 6b isoform X1
KO
K21988
transmembrane channel-like protein
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
128542874 (tmc6b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cgar02000
]
128542874 (tmc6b)
03037 Cilium and associated proteins [BR:
cgar03037
]
128542874 (tmc6b)
Transporters [BR:
cgar02000
]
Other transporters
Pores ion channels [TC:
1
]
128542874 (tmc6b)
Cilium and associated proteins [BR:
cgar03037
]
Other cilia and associated proteins
Stereociliary proteins
128542874 (tmc6b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TMC
Epimerase_2
Motif
Other DBs
NCBI-GeneID:
128542874
NCBI-ProteinID:
XP_053368990
LinkDB
All DBs
Position
15:23774785..23808011
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AA seq
802 aa
AA seq
DB search
MAHRGVSFDIDDHFMEAGPESPADEDVVHDSFTRLIEEQTQDLNSYQEAIEMNPLQEESD
DFLPFALDEQGGATEPLVEERWSSDTLRVLSSMPSRTIGRSRGAILSQCYSRTMQMCRHR
QSRPSIRSFSRSARPSICGYRVDSNSENFDREAENKRERLVNNLQNLSAGDRVRMIKAIP
LNLEERRKLSHLANSGRSTYLDQVPCCSHLRDCFVISLKQRWYTWLSFVSSLQLWQTALK
TVSGRFGTGVLSYFVFLRKLFFFNVFLFLIMGLFLVIPQAVQLPKQTRSMLYGLEVLTGT
GYFKDSVMYYGYYINYTFIKTCSDGNQSICSSHLSYNMPLAYFFTIGVAFFITCIILVYS
MSKSFGQSFRIDRSKGLLAIKVFSSWDFKVSKKSSVGLQSENITTQLKELLAEVNREKVK
SPLLQRVPVFLIQSLAWIICIVSTGVCSLGVYYFCVYVHKSYINSTDRSGLLEEARMLAL
PVVVSSINLLLPGFFNVVAWMEDYESPSTHNYIAIFRNLMLKMSLLAVLCHHWLGQVATG
QNKSLCWESFVGQELYRFLLMDFIFTMLDTFFGEFLWRLFSQKVLKRERKPVFDIARNVL
ELIYGQTLAWLGVLFSPLLPVVQVIKLFLIFYMKKTSLMMNCQAPRKAWRASQMTTFFIT
LLCFPSFLGASVCVTYTMWTIRPSENCGPFRGLATMFQAGKVWVKELATNNSHLTWLPFV
HSYLVENPFFLFLTAGIFIIVIYFHSQVVDGQRKIIELLQEQIENEGEDKKFLITRLQDI
HEQKRPRSQHHSRATREESSFT
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatcgtggtgtgagcttcgacatagatgaccacttcatggaggcaggaccagaa
agccctgcagatgaggatgtggttcatgactccttcactcggcttattgaagaacagacc
caagatctaaatagttatcaagaggcgatagagatgaaccctcttcaggaagaatccgat
gatttcttaccctttgctcttgatgagcaggggggcgcgactgaaccgttggtggaagag
cgctggtcctcagacacactcagggttctttcctcaatgcccagccgcaccattggacgc
agtcgaggcgccatcctttcccaatgttattcccgcaccatgcagatgtgcaggcacaga
caaagccgaccctcaatccgctctttctctcgctccgcccggcccagcatctgtggctat
cgtgttgacagcaactctgagaacttcgacagggaagcagagaataagagggagcggctg
gtaaataacttgcagaacctgtctgcgggtgatcgcgtgcgcatgataaaagctattccc
ttgaacttggaagagaggcggaaactcagccatttggccaactctggccggtctacctac
ctcgaccaagtcccgtgctgcagccacctcagagattgttttgtcatttctctgaaacaa
aggtggtacacctggctgtccttcgtctcctcactgcagttatggcagacagctctgaag
acagtcagtggccgcttcgggactggtgtcctctcctacttcgtcttcctcaggaagctt
ttcttctttaatgtattccttttcctcataatggggctgtttctagtgattcctcaagcc
gtgcagcttccaaaacaaaccagatctatgctctacggcctggaggtgctcaccgggacg
ggttattttaaagactctgtgatgtactacggctactatattaactacacttttataaag
acctgcagtgatgggaaccagagtatctgtagctctcatctatcctataatatgcctctg
gcctatttcttcaccatcggagtggcattcttcatcacctgcatcatcctcgtgtacagt
atgtccaagtcatttggacagagttttcgaattgaccggtccaaaggtttacttgccata
aaggtctttagttcttgggattttaaagtcagtaagaaatcctctgttggactgcaatct
gaaaacatcactactcagctcaaagagctcttagcagaggtgaaccgtgagaaggtgaag
tctcctttacttcagcgcgtgccagtttttctcatccagtcacttgcctggatcatatgc
atcgtgagcactggagtgtgttccctcggcgtctactacttctgtgtatatgtgcataag
agttacataaacagtactgaccgttccggactgctggaagaagctagaatgctggctctc
cccgtggttgtgtcatccattaatctgctcctgcccggcttctttaatgtcgtggcctgg
atggaagactacgagtcgccgagcacacacaactacattgccattttcaggaacttgatg
ttgaaaatgagcctgcttgcagttttgtgccatcactggctgggtcaggtagcaactggc
caaaataaatcactgtgctgggagagttttgtggggcaggagctgtatagattcctgtta
atggacttcatcttcacaatgctcgataccttctttggggagtttctgtggcggttgttt
tcacagaaggttctgaagagggaaagaaagccagtgtttgatattgcccggaatgttctc
gagctcatttatggacagacattagcttggttgggagttctgttttcacccctcctgcct
gtagtgcaggttatcaagctgttcctgattttctacatgaaaaagacaagtctgatgatg
aactgtcaggctcccagaaaggcatggagggcgagtcagatgaccaccttcttcattacc
ctcctctgcttcccatctttcctgggtgcatcagtgtgcgtcacctataccatgtggacg
atcagaccctccgagaactgtgggccgttccgtggcctcgccaccatgtttcaagcagga
aaagtatgggtgaaagagctggccactaataacagtcatctgacctggctcccttttgtt
cattcatacctggtggagaaccctttcttcctctttctcactgctggaatcttcataata
gttatctatttccacagccaagtggtggatggacagaggaagattattgagctgctacag
gaacagattgaaaatgagggagaagacaagaagttcctcattactcgattacaagacatc
cacgagcagaaacgtccacgttcccagcatcacagcagggcaaccagagaggagtccagt
ttcacatga
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integrated database retrieval system
