Clarias gariepinus (North African catfish): 128542947
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Entry
128542947 CDS
T10780
Symbol
hnrnpm
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein M
KO
K12887
heterogeneous nuclear ribonucleoprotein M
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128542947 (hnrnpm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgar03041
]
128542947 (hnrnpm)
Spliceosome [BR:
cgar03041
]
Common components
Common spliceosomal components
hnRNP proteins
128542947 (hnrnpm)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_MARF1
RRM_3
RBD_DEAH11
HnRNP_M_NLS
RRM_5
DUF7552
Motif
Other DBs
NCBI-GeneID:
128542947
NCBI-ProteinID:
XP_053369137
LinkDB
All DBs
Position
15:14984252..14991410
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AA seq
672 aa
AA seq
DB search
MSEKEETPKMSSDAAAEKPGQGNALNGKPGHESRKERSSKRGGGGRYEPYANPSKRYRVF
VSNIPYDVKWQALKDLMKEKVGEVTYVEHLMDAEGKSRGCAVVEFRTEELMKKAVEKVNK
HNMNGRPLKVKEDPDGVIAQREAQRSQGGGGGPPGGMGGGMGGGMGMGPGPGAPPMVNIP
PSLLNNPNIPNEIIHGLQAGKIGSTVFVANLDYKVGWKKLKEVFSMAGVVVRTDILEDKD
GKSRGMGTVTFEMPIEAVQAVSMFNGQLLFNRTMHVKLDEKSMPKGDFAPPERPPALPRG
LSGIGLGLGPGGQPIDATQLNRGGGMSNMGPGGMDGMGFGGMGRMGGMDNFGGGMNNMDR
FGPSGMGRMNDMDRGIGAAFDREFGGRSEMGMSRNNFGDSFDRGMGNSMGMDRMSSGMDR
LGANMDRMGSLDRIGMDRMDRVSDLDRMGSSFDRMGSGMDRLGPSMDRLGSGLDRMSSGL
DRLGPSNFDRLGPSSLDRMSAGMDFTSPMGMDRMNTGLDRMGSNFERMGSGGLDRFPAPG
MDRMGSSIDRMDRMGSAGVGGQFDRGADMDRGNFGSFGSVGQGGPGAGVNARKGCQIFVR
NLPFDFTWKMLKDAFNSCGMVQYADIKMENGKSKGCGVVRFDSPETAERACRTMNGYRLN
GREIDVRIDRNA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaaagaagaaacgccgaaaatgtcgtctgatgctgcagcagagaaaccaggc
caaggaaatgcactgaatggaaagcccggccatgagtccaggaaggagaggtcatctaag
cgaggcggcggtggtagatacgagccgtacgccaacccctccaagagatatcgtgttttt
gtgagcaacattccttatgatgtcaaatggcaggcgctgaaggacctaatgaaggaaaaa
gtgggtgaggtaacgtacgtggaacacttaatggacgcggaaggcaaatcaaggggatgc
gcggtggttgagtttagaactgaagagttaatgaagaaggctgtggaaaaggtcaataaa
cacaacatgaatggacgtcctttaaaagtgaaagaggacccagatggagtgattgcccag
cgtgaagcccagaggtctcagggtggtggtggaggacctcctggtggtatgggtggaggg
atggggggtggaatgggtatgggtcccggacctggtgctcctcccatggtcaacatcccg
ccgagtctcctgaacaatccaaacattcctaatgagatcatccatggccttcaagctggc
aagatcggaagtacagtttttgtggcaaatcttgattacaaggtgggctggaagaagctg
aaggaggtgtttagtatggctggggtcgtcgttcgcaccgacatcctagaggacaaagat
ggcaagagcaggggcatggggacagtcacctttgagatgcccattgaagctgtgcaagca
gtctccatgttcaatggccagctcctgttcaatcgaaccatgcatgttaagttggatgag
aaatcaatgcccaagggtgactttgcaccccctgagagaccacctgcactgccccgtggt
ctgagtggtattggtctgggattggggcctggaggacaacccattgatgctacacagctg
aatcgtggtggagggatgagcaatatgggacctggaggaatggatggaatgggatttggt
ggcatgggtagaatgggaggaatggataattttggaggtggaatgaacaacatggatcgt
tttgggccatcaggaatggggaggatgaatgacatggatcgtggaattggcgctgccttt
gacagagaatttggtggccgcagtgagatgggcatgtcccgcaataactttggggactcc
tttgacagaggaatgggtaactccatgggaatggatcgcatgagctcaggcatggacaga
cttggtgccaacatggatcgcatgggcagcctggacagaatagggatggatcgcatggac
cgtgtgtctgacctggacaggatgggttctagttttgatcgcatgggctcaggcatggat
cgtctggggcccagcatggacaggctgggatcaggcctagaccgtatgagctcaggtctg
gaccgcctgggtccatccaattttgaccgtctaggcccgtccagcctggaccgcatgagt
gcaggcatggacttcacctcaccaatgggcatggacaggatgaatactggtctcgaccgc
atgggctccaactttgagcgaatgggctcgggtgggctggaccgtttcccagccccgggg
atggaccgcatgggttccagcattgaccgaatggaccgcatgggctctgctggtgtagga
gggcagtttgatcgaggtgcagatatggaccgtggaaactttggcagctttggctcagtg
ggacaaggaggaccgggagctggagtcaatgccagaaagggctgccagatctttgtcaga
aatctgccatttgattttacatggaagatgctgaaggatgccttcaattcatgtggtatg
gtgcagtatgctgatattaagatggaaaacggcaagtcaaagggttgtggcgtggtgcgc
ttcgacagccctgaaacagcagaacgcgcttgccgcaccatgaacggctatcgacttaat
gggagagagattgatgtgaggattgacagaaatgcgtaa
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