Clarias gariepinus (North African catfish): 128543027
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Entry
128543027 CDS
T10780
Symbol
eif4a3
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03013
Nucleocytoplasmic transport
cgar03015
mRNA surveillance pathway
cgar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128543027 (eif4a3)
09122 Translation
03013 Nucleocytoplasmic transport
128543027 (eif4a3)
03015 mRNA surveillance pathway
128543027 (eif4a3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128543027 (eif4a3)
03041 Spliceosome [BR:
cgar03041
]
128543027 (eif4a3)
03009 Ribosome biogenesis [BR:
cgar03009
]
128543027 (eif4a3)
03012 Translation factors [BR:
cgar03012
]
128543027 (eif4a3)
Enzymes [BR:
cgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128543027 (eif4a3)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
128543027 (eif4a3)
mRNA cycle factors
Stress granule specific factors
128543027 (eif4a3)
Spliceosome [BR:
cgar03041
]
Complex C
Other components
EJC/TREX
128543027 (eif4a3)
Ribosome biogenesis [BR:
cgar03009
]
Eukaryotic type
90S particles
Helicases
128543027 (eif4a3)
Translation factors [BR:
cgar03012
]
Eukaryotic type
Initiation factors
eIF-4
128543027 (eif4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
128543027
NCBI-ProteinID:
XP_053369283
LinkDB
All DBs
Position
15:complement(23573439..23579781)
Genome browser
AA seq
406 aa
AA seq
DB search
MAAAPASGRKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQ
QRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKV
LLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV
LDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS
SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI
GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggctcctgcaagtggaaggaagcgactcctgaaggaggaagatatgaccaaa
gtggagttcgagaccagtgaagaggtcgacgttacgccaacttttgatactatgggcctg
cgggaggacctgcttcgcggcatctacgcttacggttttgagaaaccatcagctatccag
caaagagccattaagcagattataaaggggagagatgtgattgctcagtcacagtctggt
accggtaaaacagccacgttttgtgtatcagtgttgcagtgtctggacattcaggtgcgt
gagactcaggcgttaattttggctccaaccagagagttagctggacagattcaaaaggtt
cttcttgctctgggtgactacatgaacgtccagtgccatgcctgtattggtggcacgaat
gtcggtgaggacatcaggaagcttgactacggtcagcatgttgtagcaggaacccctgga
agagtgtttgacatgatccgtcggagaagtctgaggacccgtgcgatcaagatgctggtt
ctggatgaagctgatgaaatgcttaacaaaggttttaaggagcagatttatgatgtgtac
cgatacctgcctcctgcaactcaggtggttttgatcagtgccaccctgccgcatgagatc
ctggagatgactaacaaattcatgacagatcccatccgcatcctggtcaagcgtgatgag
ttgacactggaaggcattaagcagttctttgtggctgtggagagagaagagtggaagttc
gacacactgtgtgacctctacgacactctaaccatcacgcaagcggtcatcttctgcaac
accaagcgaaaggtggactggctgactgagaagatgagggaggcaaactttaccgtgtcc
tctatgcatggagacatgccccagaaagagagagaatccattatgaaggagttccgatct
ggagccagccgagtgctgatctctacagacgtgtgggccagagggttggatgtgccacag
gtctcccttatcatcaactacgacctgcccaacaacagagagttgtacatccacagaatt
ggtcgatcaggccgttatggccgtaagggtgtggcaatcaactttgtcaagaacgacgac
atccgcatcctgcgtgatattgagcagtactattccacacagattgatgaaatgccaatg
aatgtggctgatctgatctaa
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