Clarias gariepinus (North African catfish): 128543035
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Entry
128543035 CDS
T10780
Symbol
pkd1l2a
Name
(RefSeq) polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cgar04040
]
128543035 (pkd1l2a)
04091 Lectins [BR:
cgar04091
]
128543035 (pkd1l2a)
Ion channels [BR:
cgar04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
128543035 (pkd1l2a)
Lectins [BR:
cgar04091
]
C-Type lectins
Others
128543035 (pkd1l2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
Lectin_C
SUEL_Lectin
Ion_trans
GPS
PKD
PKD_4
Motif
Other DBs
NCBI-GeneID:
128543035
NCBI-ProteinID:
XP_053369297
LinkDB
All DBs
Position
15:25053178..25072933
Genome browser
AA seq
2461 aa
AA seq
DB search
MDTHLLSTLLLLAILGVTAINSEEDTETVFCLDHQKAFEGSCYEFVTLQRSSLEAQRWCE
RGGGHLAFIQNDETQQFLQKHLQSEQDWWLGLAPASFNLSMGSAATEGSLSWLDGSDVSY
SNWLREPELGDACGYIVKKSGFQWASTQNCSQEFHFICEFESGHALACLEHNATLQCGSG
QVIEIDDSFYGRKTLHYCRTGRSPPDSSLQEECSWVDVVDMVSEHCLGLQVCQAVADVAS
FGEPCPGLGSYLSVDYHCKDGLHLLITKQAAVFDNVTLTIKWLLHPFQGNLTCSVNTGDG
HTIDPYMPEELQSNVVHRYQDAGVYTVTVECSTSEWHVAAQKTVTIQEPAGEFSKIVCYS
SNQTTDSENCKGLKQHALRIQVQLSSGTNVTYKIQHGITELVRSPEVRGIIPHNLTIPEE
ASQLLGLGCHQLTLLASNRVTAPDVSTPLELCLVEPVDGLQASVAPEQDLCSDSALYVNV
SLDRGAPVEVLFLVSGDNDSFSETHNMLNGSVQMFRVFSKIEGQMRVKVRVSNLFSSAEA
DAGDTLLDCQTEDLGEINGNNLTITANPENPVIGTSSIMLDVNGLNRNAKLYTFAWNCSG
TCPCDVSSPTKTHQVQATCLPPPYSFSIYSMTAVKTTGKPEEQTASKCISVFPGSDLNPV
ITCSNCNPVNVGANVELQLECEGCQQMVWYIEDTNPVPDALSSCYSEKGQSVLIKQKEGV
SSFVIDSATLVNAQQDIKVVAYGVRDGLSGSAEFTIPIFGASSTLFPTLLPDSVATNGQE
MSPPPSCNINPTVGDSLSPFNITCTVASPFCKAGPCMYCFRTLTGDYLYCGHNQTVESLF
LPVGSNINNTLAVSITVENLEGQKINTTLSVQVNDASVGPTVEDLQSFVSKQVDQLLQLR
KLTGAALAQMFQSVSNRLNEDTTEGQEQDAKMKLREQMLLDLGTAMSAAPLRNPLEVQKT
ADAVVGLTRQSKELTSTAQLEASSLLSNLSMSLVSLTLSEGDDKEVTRQVVTPIIQAASN
ILKASASTDQQEIISENLLTAADNVQSALLAGVSVDQEPIIVSTSEISVYVNRMSAVALQ
KQPFSIEHNSSASFVLPSLGPNVLPSEEPVDVRMLSFAINPFPWRDGEPINGAVASLSIT
RKNGSVIPVSNLTEEIEIILPRQEAEVNSTLLDLGNYSTLVINVTTPNISLVLKLDPSEE
ILLHLLLGFEHYPNNTHYKTTIQLPQPGNSTEERYAWVLDPKDVALEVGVYYLLVRPISQ
AGVNSSNASVFITSIAAQCKYWDETETNWSDHGCRVGPRTTPLITQCLCTHLTFFGSSFF
VMPNLVDVSRTAELFATFVNNPVVVCFVGAIFLVYLMVVIWARRKDIQDTAKVKVTLLED
NDPLAEYRYLLTINTGHRRGASTSSQVTVTLMGSEGESEPHHLTDPDKPVFERGGVDMFL
LTTPFSLGELQSIRLWHDNSGKHPAWYVNKVMVQDLETGQKWHFLCSSWLAIDVGECTLD
KVFPVATEMDLKRFSNLFFMKTTKDFQDGHIWFSVINRPPNSNFTRVQRVSCCFSLLLCT
MLTSIMFWGIPTDPSEQTMDLGKIEFTWQQVMIGFQSSIIMFPINLLIVSIFRNVRPRER
RTVQAPKQSKTDSVKQGKTGRVSPNQPPSPPSDYKEITPHAVIRDIKRIAQSLSKAMRSP
LPRIDPEKMDINDLLSLVEDIICQQNRIGGEFYSDASKKELSISLGAVNLHERSPEQMPK
EKNSIYRQYLYKQLQNVEKELRLLGPSRFSKPESYVQAVLQVQGMKRLLEPYLSSSTNRD
QDSCSSSLGKDHDGGKKCCQKGLPWWFVFVAWILVAATSGVSAYFTMMYGLTYGMERSVS
WLISMLVSFFESLFITQPIKVLGFAVFFALVLKKVDQEEYSDVPIEGAISSTDDPDGICI
VRRDSTCSFYQPPPPSDIEKMKSNMIKEQKVFALIREILIYFGFLWMLLLVAYGQRDPNA
YYLTQHIQQSFRNGITDSMNCKDVLTWTNTTLLNNVFGKRPGFITDGNSKLVGNARLRQV
RVHKNSCRTSSFMSRSIQDCHAPYSWEVEDMGSYGPGWNRSNDVNLSKSLLMPWRYQTQS
RLRTHPIWGRVAFYRGGGFVVDLGPNKENASSLLQYLFDNIWVDKYTRAIFVELTVYNAN
VNLFCMVTLMFETTAVGAFQYRSDLQSVRLYQSAGGFHIFMMASETIYFLFILHYMFQQG
KLMKQHKWEYFRSKWNVLELGIIILSWSALCVFIKRKLLGNQDIEYYQNHKDQHASFYET
ATADGVLGYLIAFLVLLATVKLWHLLRLNPKLQMITATLRRAWNDISGFIIVMTIMLLAY
SIACNLMYGWKLYSYHTLLHAAKTIVSLQLGIFNYEEVLHYNPVLGAFVIGSCIIFMTFV
VLNLFISVILVAFSEEQLHHKPSEEEEIVDLMLMKICSLLGIKVKKKQVLEEPKAAPFTV
S
NT seq
7386 nt
NT seq
+upstream
nt +downstream
nt
atggatacacatcttctctccactcttctacttttggccattctgggtgtcactgccatc
aatagtgaagaggacacagagaccgtgttctgtcttgatcaccaaaaagcctttgaaggc
tcttgctatgagtttgtgaccctgcagcgcagctccctcgaagctcagcgttggtgtgag
cgtggtggtggacacctggccttcatccagaatgatgagacgcagcagtttcttcagaaa
catttgcagtcagagcaggactggtggctgggactggcaccagcctctttcaacctcagc
atgggatccgctgccacagagggttccttgtcctggctggatggatctgacgtgagttac
tccaactggctccgtgaacctgagcttggagacgcttgtggttatatcgtgaagaaatct
gggtttcagtgggcatcaactcaaaactgtagccaagagttccactttatctgcgagttt
gagtcaggacatgctctagcctgtttggaacacaacgctacactacagtgtggctctggt
caggttatagagatcgacgacagcttctatggcaggaagacgctgcactactgcaggact
ggacgctctccacccgactcatctttgcaggaggagtgcagctgggtggatgtggtggat
atggtgtcggagcactgccttgggttgcaggtatgccaggctgtagcagacgtagcatcc
tttggagagccttgcccgggactaggaagttatctatcggtggattatcactgcaaagat
ggtcttcatctactgattaccaagcaagctgccgtctttgataatgtcaccttgactata
aagtggttgctccacccttttcaaggaaatctcacatgcagtgtgaatactggggatgga
cacactatcgacccctacatgcccgaagagttacagagtaatgtagtgcacaggtatcaa
gatgctggagtctacaccgttacagtggagtgtagcaccagcgagtggcatgtggcagct
cagaaaaccgtcaccatccaagaacctgctggggaattcagcaaaatcgtgtgttacagt
tcaaaccagacaacagacagtgaaaactgcaaaggtcttaaacagcatgcgctgagaatc
caagtgcagctcagttcaggtactaacgtcacatacaaaatccagcacgggatcactgag
cttgtccgctcacctgaagtcagagggatcatcccgcacaacctcaccatccctgaagag
gcttcacagcttttgggattgggatgccatcaacttactctcctggcctccaacagagtg
acggctccagatgtgtctactcctcttgaactttgcttggttgagccagtggacggtctt
caagcctctgtggcacctgaacaggacctgtgctcagactccgctctatatgttaatgtc
tctctggatcgtggtgctccagtggaagtgctctttctggtgtctggggataacgacagc
ttctctgagacccataacatgctgaatgggagtgtacagatgttcagagtctttagtaaa
atagaaggtcaaatgcgggtaaaagtcagagtgtcaaatttgttttcatcagcggaagca
gatgcaggagacacactgttagattgccagacagaggatctgggggagataaatggcaat
aacctgacgatcactgcaaacccagagaacccagtcataggcacgagtagcataatgttg
gacgttaatggcctaaatagaaatgctaaactttacacatttgcctggaactgcagtgga
acttgtccctgtgatgtcagtagtccaactaaaacacatcaggttcaagccacttgtctc
cctccaccctacagcttttcaatctactctatgactgccgtaaagacaacggggaagcca
gaggaacagacagcaagcaaatgcatctctgtgtttcctggaagtgatttaaatccagtc
attacatgttccaactgcaacccagtgaatgtcggtgcaaatgttgagctgcagctggag
tgtgaaggctgtcagcaaatggtttggtacatcgaggacacaaaccctgtacctgatgcc
ttgagttcctgttattctgaaaaaggacaaagcgtactgataaaacagaaggaaggtgtc
agctcttttgtaatcgacagcgcaactctagtcaatgcacagcaggacattaaagttgtt
gcttatggtgtaagagatggcttatctggatcagctgaattcaccatcccaatatttggt
gcctcgtctactttgttcccaacattactacctgatagtgtggccacgaatgggcaagaa
atgtcccctccgccatcctgtaacattaatcccactgttggagacagtctctctcccttt
aatatcacatgcactgtggcttctccattctgcaaagctggaccctgcatgtactgcttc
agaacattaactggtgattacttgtactgtggccataaccagacagtggagtcactcttt
cttccagtggggagtaacatcaacaacacccttgctgtatcaatcactgttgagaacttg
gaaggacagaagattaacacaaccttatctgtccaggtgaatgatgcaagcgttgggccc
acagtggaggatctgcagagctttgtgtccaagcaggtggaccagctgttgcagcttagg
aagctgacaggggcagcactagcccagatgttccagtctgtctctaacaggctgaatgag
gatacaaccgagggtcaagaacaagacgcaaagatgaagctacgagagcagatgctgcta
gacctgggcacagctatgagtgctgcccccctcaggaacccattagaagtgcaaaagaca
gctgacgctgtagtgggcctcactaggcaaagtaaagagctgacatctacagctcagctg
gaagccagctcacttctgtcaaacctcagtatgtccctggtctctctaacgctctctgag
ggggatgacaaggaagtaacaaggcaggtggttacaccaattattcaggctgccagtaac
atcctcaaagcttctgccagcacagaccagcaggaaatcatttcagaaaacttgttaact
gcagcggacaacgtacagagtgcgctactggctggtgtaagcgtagaccaagagcccatc
atcgttagcacgtctgagatcagtgtgtatgtaaacagaatgtcagcagtggcactacag
aagcagcccttcagtatcgagcacaacagctcagccagcttcgtgcttccgtctttgggt
cctaatgtgctcccttcagaagagccggtggatgtgcggatgctaagttttgcgataaac
cctttcccctggagagacggcgagcctataaatggagcggtggcttctctatccatcact
cgaaagaatggatctgttatccctgtatcaaatctcactgaagagattgagatcatctta
ccacgacaagaggctgaagttaacagcacgttactggacttggggaactacagtaccttg
gtcattaatgtgaccacgccaaacatatctttggttttgaagctggacccctcagaagag
atactattacatttactcctgggtttcgaacactacccaaacaacactcactacaagacc
acaattcagctccctcaaccaggaaattcaacagaagagaggtatgcatgggtgctggac
cccaaggatgtagcactggaagtaggggtttattatcttctggtgaggcctattagccaa
gcaggtgtaaactcctcaaatgcctcagtcttcatcacttccatagctgctcagtgtaaa
tactgggatgagactgaaaccaactggagtgaccatggctgcagggttggccctcgcacc
acaccactgattacccagtgtctgtgtacgcatttgacattttttggcagttcattcttt
gtcatgcccaacctggttgacgtgtcccggactgctgaactttttgccacatttgttaac
aaccctgttgtggtgtgttttgtgggtgccatattccttgtctacctcatggttgtgatt
tgggcccgaagaaaggacatccaggacacagcaaaggtcaaagtcacattgctagaggac
aacgatcccttggctgaatatcgctacttactgaccatcaatactgggcatcgtcgagga
gcttctacatcctctcaggttacagtgacgctcatgggctctgagggagagagtgagccc
caccatctaactgatccagacaagccggtttttgaaagaggaggagtggacatgttcctc
ctcactactcctttctcacttggagagctgcagagcatcagattatggcatgataattct
gggaagcatcctgcttggtatgttaataaggtcatggtccaagatctggagacggggcaa
aagtggcatttcttatgcagttcatggctggccattgatgtaggagagtgcactctggac
aaagtgtttcctgtagcaacagagatggacttaaaaaggtttagtaatctgttctttatg
aaaaccaccaaggatttccaagacggtcacatctggttttcagtgataaatcggccaccc
aatagtaacttcactcgagttcagcgtgtatcatgctgcttctctctgttgctctgcacc
atgctgaccagcatcatgttctgggggattcccactgacccctctgagcagaccatggac
ctgggtaagatcgagtttacctggcagcaagtgatgattggattccagagctccatcata
atgttccctatcaaccttcttattgtgagcatcttcagaaacgtccgaccaagggaacga
aggacagttcaagcacctaaacagtctaagactgattctgtgaagcaaggaaaaacagga
cgggtgtcgccaaaccaacctccttctccaccgagtgactataaggagatcacaccacat
gctgtaatcagggacatcaaaaggatagcccaatcactctccaaggctatgaggagcccg
ttaccaaggattgaccctgagaaaatggatatcaatgatctcctgtcactagtcgaagat
ataatttgtcagcagaaccgtataggaggcgagttttattctgatgcctccaaaaaggag
ctgtccatctctctgggggctgtaaatcttcatgagaggagccctgagcagatgccgaaa
gagaaaaatagcatctacaggcagtatctctacaaacaactccaaaatgtggagaaagag
ctgaggctgctgggtccttcccgattctctaaaccggagagctatgttcaggcggtgctg
caggttcaaggcatgaaacgcttgctagagccgtatctctcctccagcaccaatagggac
caggattcttgcagctccagtttggggaaggaccatgatggtggtaagaagtgctgtcag
aaaggcttgccttggtggtttgtgtttgttgcctggatccttgtcgcagccaccagtgga
gtgtcagcgtattttaccatgatgtatgggctgacttatggaatggaacgctctgtcagc
tggcttatttcaatgcttgtgtctttcttcgagagtctcttcattacccagcctattaag
gtgcttggatttgccgtcttctttgcgctagtcctaaagaaagttgatcaagaggaatat
agcgatgttccaattgaaggtgctatatcaagtacagatgatcctgatgggatatgcatt
gtcaggagggacagcacatgcagtttctatcagcctcctcctccctctgacattgagaag
atgaagagcaacatgatcaaggaacagaaagtctttgcacttatcagggagattctcatt
tactttggcttcctgtggatgctactcctggtggcttacggtcagcgagacccgaatgct
tactatctcacgcaacacatccagcagagcttcaggaacggcatcacggacagcatgaac
tgcaaagatgtgttgacctggacaaacaccactctcctaaataacgtttttggaaaacga
ccaggcttcatcacagatggaaactctaagcttgtaggcaatgctcgactccggcaggtt
cgagtgcacaagaactcctgcaggacctccagcttcatgagtcgctccattcaggactgc
catgctccatactcttgggaagtggaagacatgggttcttatggtccaggttggaacaga
tcaaatgatgtaaacttgtcaaagagtctcctcatgccatggcggtaccaaacccagtcc
agactgaggacacaccctatctggggtagggtggctttctacagaggtggcggctttgtt
gtggatctggggcccaacaaagaaaatgcaagcagtttgcttcagtacctttttgacaac
atctgggtggacaaatacactcgggctatctttgtggagctcacagtgtataatgcaaac
gtcaacctcttctgcatggtcacgctgatgtttgagaccacagcagtgggagcatttcag
tatcgcagtgacctgcaaagtgtccgcctttatcagtcagctggtggttttcatattttc
atgatggcctctgagacgatctattttctcttcattcttcattacatgtttcagcagggc
aagcttatgaaacagcacaagtgggaatacttcaggagcaaatggaatgttttggagcta
ggcattattattttaagctggagtgcactgtgcgttttcatcaagaggaagctgttgggc
aaccaagacatcgagtactatcaaaaccacaaagaccaacatgctagcttttatgaaact
gccacagcagatggagttcttggataccttatagcttttctggttttgctggctacggtt
aaactgtggcacctgctgcgcctcaaccctaaactgcaaatgatcaccgcaacattgcgt
cgggcgtggaacgacatctctggcttcattatcgtcatgacaattatgttgttggcttac
tccattgcttgtaatttaatgtacggttggaagctttattcatatcacactcttctccat
gctgccaagaccattgtaagcttacaacttgggatcttcaactatgaagaggttttgcat
tacaatcctgttcttggtgcgtttgtgattgggtcttgcatcatcttcatgacgtttgtg
gttctaaacctattcatatctgttatcctggtggcattttcagaagaacagctacatcat
aagccatctgaagaggaggaaattgtagacctaatgctgatgaagatatgcagccttttg
ggaatcaaggttaagaagaagcaggtgctggaggaaccaaaagcagcaccctttaccgta
tcataa
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integrated database retrieval system
