Clarias gariepinus (North African catfish): 128543129
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Entry
128543129 CDS
T10780
Symbol
sptbn1
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04517
IgSF CAM signaling
cgar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
128543129 (sptbn1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128543129 (sptbn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cgar04812
]
128543129 (sptbn1)
Cytoskeleton proteins [BR:
cgar04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
128543129 (sptbn1)
Intermediate filaments
Intermediate filament-binding proteins
128543129 (sptbn1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SOS1_NGEF_PH
SCAR_helical
PMC2NT
PH_11
Motif
Other DBs
NCBI-GeneID:
128543129
NCBI-ProteinID:
XP_053369444
LinkDB
All DBs
Position
15
Genome browser
AA seq
2348 aa
AA seq
DB search
MTTVAAEYDHMDIQQQYQDTVNNRWDEEWDNENSSARLFERSRIKALADEREAVQKKTFT
KWVNSHLARVSCRITDLYMDLRDGRMLIKLLEVLSGEKLPKPTKGRMRIHCLENVDKALQ
FLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVVTEDNKEKRSAKDALLL
WCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLA
EQHLGLTKLLDPEDISVDHPDEKSVITYVVTYYHYFSKMKALKVEGKRIGKVLDNAIETE
KMIEKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFTEKGN
LEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRNELIRQEKLE
QLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAATKKHEAIETDIAAYEERVQAV
VSVARELEAENYHDIKRIAARKDNVLRLWDYLLELLKARRQRLEMNLGVQRVFQEMLYIM
DWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADIAIQADRVRAVNATAQKFAVDDEGY
KPCDPQVIRDRVAHLEFCYQELTQLAAERRARLEESRRLWKFFWEMAEEEGWIREKEQIL
SSDDVGKDLTGAVRLLSKHRALEDEMSGRAGHLQHTVREGQAMADAGHFGEAKIRERVAD
LQGQWAALEQLAAVRKARLEEACSLHQFQADADDVDAWMLDALRIVSSDDVGHDEFSTQA
LVKKHKDAAAEVASYRPVIDSLHEQAQALPNELAQSTDITGRLSGIEERYKELTELTRLR
KQALQDALALYKMFSEADACELWIDEKEQWLNSMEIPEKLEDLEVIQHRFESLEPEMNNQ
ASRVAVVNQIARQLMHSGHPSEKDIKAQQDKLNTRWSQFRDLVDQKKESLNSALGVQNYH
LDCNETKSWIREKTKVIESTQELGNDLTGVMALQRKLTGMERDLAAIEAKLGDMRGDAER
LAAEHPEQANAIKGRLEEIGTVWEELKDTMQNREASLGEASKLQQFLRQLDDFQSWLSRT
QTAIASEDMPNTLAEAEKLLAQHEGIKHEIDNYEEDYQKMRDMGDMVTQGQTDSQHMFLR
QRLQALDTGWNELHKMWENRQNLLSQSHAYQLFLRDTKQAETFLNNQEYVLAHTEMPTTL
EGAEAAIKKHEDVMTTMDANEEKINGVVEAGRRLASDGNINAEKIQERANSIDDRHKKNR
EAAVELLMKLKDNRDLQKFLQDCQELSLWISEKMLTAQDMSYDEARNLHSKWLKHQAFMA
ELQSNKEWLDKIEKEGQQLVSEKPETEAVVKEKLSVLQTQWQELESTTQTKAQCLFDANK
AELFTQSCADLDKWLGGLEGQIQSDDYGKDLTSVNILLKKQQMLENQVDVRKKEVEELQS
QAHVLRQEGKDTDEVDGRREVVEKKFQELLEPLLKRKNFLMASREIHQFNRDVEDEILWV
EERMPLANSTDHGHNLQTVQMLIKKNQTLQKEIQGHQPRCDDIFDRSKNIVTEDSPSVDA
IKARLVELKDLWNLLSQETAKRHERLEEAHQAQQYYFDAAEAEAWMSEQELYMMSEEKAK
DEQSSVAMLKKHQILEQAVEDYAETVHELSKTSRGLVAENHPESERIGMRQSQVDKLYAG
LKDLSEERRGKLDERFRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFRE
FARDTGNIGQERVDGVNRMADELINAGHTDAATVAEWKDGLNEAWADLLELIDTRTQILA
ASYELHKFYHDVKEILTRILDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQ
LQEDASRLQSAYAGDKADDIQRRESEVLEAWRNLLEASEGRRARLLDTGDKFRFFNMVRD
LMLWMEDVIRLIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTACIELGKSLLARKH
YASEEIKEKLLQLTDKRKEMIDKWEDRWEWLRLILEVHQFSRDAGVAEAWLLGQEPYLSS
REVGQSVDEVEKLIKRHEAFEKSAATWEERFSALERLTTLELLEVRRTQEEEERRRKPPT
PEPEQVIEAEQREGEQIAQNGLPSDQESPRDGVDGEIVNGVPERSSKEPSPIPSPTLGRA
KGSQSSTLPAKSQDSPSAQLEGFLHRKHEYEGHNKKASNRSWHNVYCVINNQDMGFYKDN
KNAGQGIPYHNEIPVSLKDAVCEVAVDYKKKKHVFKLRVTNGNEYLFQAKDDEEMNTWMQ
AIQNAVSGSSPSDKSDVTPSNQSTPASSRAHTLPASVSLTTESSPGKREKDKEKDKEKRF
SLFSKKKQ
NT seq
7047 nt
NT seq
+upstream
nt +downstream
nt
atgacgacagtagccgccgaatatgaccacatggacatccagcagcagtaccaggatact
gtcaacaaccgctgggacgaggagtgggacaatgagaacagctcggcacgcctgttcgag
cgctctcggatcaaagcgctagcagatgagcgcgaggcagtgcagaagaagaccttcaca
aaatgggtcaactcgcacctggcgcgggtctcctgccgcatcacagacctgtacatggac
ctccgggatggacgcatgctcatcaagctcctggaggtgctctctggagagaagctgccc
aaacccacgaagggacggatgcgaatccactgtctggagaacgtggataaagccctgcag
ttcctcaaggagcagcgcgtccacctcgagaacatgggctcccatgacatcgtcgacggc
aaccaccgcctcaccctcggcctcatctggaccatcatcctccgcttccagatccaagac
atcagcgtcgtaacagaagacaataaggaaaagcgctcggctaaagacgctctgcttctg
tggtgtcagatgaagacagcaggctatccgaacgtcaacatccacaacttcaccaccagc
tggcgcgacggaatggcgttcaacgccctcattcacaaacacaggccggatcttatcgat
tttgacaagctgaagaagtccaacgctcactacaacctgcagaacgccttcaacttggcc
gagcagcacctgggcctcactaaactgctcgaccctgaggatatcagtgttgaccatcct
gacgagaagtcagtcatcacctacgtcgtcacatactaccactatttctccaagatgaag
gctctaaaagtggagggcaaacgcattggcaaagtgctcgataacgccatcgaaacagaa
aagatgatcgagaaatacgagtctcttgcgtccgaccttctggagtggatcgagcagacg
atcatcatcctgaacaaccgcaagttcgcgaattctcttgtaggagtccagcagcagctc
caagctttcaacacgtaccgcactgtcgagaagcctcccaagttcacagaaaaaggaaac
ctggaagtgcttctgtttacaatccaaagcaaaatgagagccaacaaccagaaagtctac
atgccccgagagggaaagcttatctcggacatcaacaaggcctgggagcgtctggagaag
gcggagcacgagcgagagcttgccctcaggaacgagctgattcgtcaggagaagcttgag
cagctggcacgccgcttcgaccgcaaggcggccatgagagagacctggctcagcgagaac
cagcggctggtgtcacaggacaacttcggttttgacctccaggcagtggaggcggccacc
aagaagcacgaagccattgagacagacatcgcagcctacgaggaacgcgtgcaagccgtg
gtatccgtggctagggagctggaagcagagaactaccatgacatcaagcgcattgcggct
cgtaaggacaacgtcttgcggctctgggactacctcctggagctgctgaaggcacgcagg
cagaggctggagatgaacctgggcgtgcagcgtgtcttccaggagatgctctacatcatg
gactggatggatgagatgaagatgctgctgctttctcaggactacgggaagcacttgctg
ggagtggaagatctgcttcagaaacacgccctggtggaggccgatattgccatccaagcc
gaccgtgtgcgggccgtcaatgccaccgcccagaaatttgccgttgatgatgaaggttat
aagccgtgtgatccgcaggtgatccgtgaccgcgtggctcacctggagttctgctaccag
gagttgacgcagctggcggctgagcgccgggcacgtctggaggagtctcgtcgtctctgg
aagttcttctgggagatggctgaggaggagggctggatccgtgagaaggagcagatcctg
tcatcggatgatgtcggcaaggacctgacgggcgccgtgcgtctgctgagtaagcacagg
gcgcttgaggatgagatgagcggtcgagccgggcacctgcaacacactgtgcgtgagggc
caggccatggctgacgctggccactttggagaagccaagatccgtgagcgtgtggctgat
ttgcagggtcagtgggcagctctggagcaacttgctgcagtcaggaaggcacgtctagag
gaggcctgcagcttgcaccagttccaggctgatgccgatgacgtggatgcctggatgctg
gacgcgctgcgcatcgtctcaagtgacgacgtcggccatgacgagttctccacacaggcg
ctggttaagaagcacaaggacgcagcagccgaggtggccagctaccgacccgtgattgac
tcactccacgagcaggctcaggcacttcctaacgagctggcccagtcgaccgacatcacc
gggcgcctgtctggcatcgaggagcgctataaggagctgacggagctcacacggctaagg
aaacaggctctgcaggatgcactggctctgtataagatgttcagtgaagctgatgcttgc
gagctatggatcgacgagaaggaacagtggctcaacagcatggagattccagagaaactc
gaggacctggaagttattcagcacaggttcgagagtctggagcctgagatgaataaccag
gcgtcccgcgtggccgtggtcaatcagatcgcccggcagctgatgcacagtggacacccc
agcgagaaagacatcaaggctcaacaggacaaactgaacacaaggtggagccagttcaga
gacttggtagaccagaagaaggagtccctcaactcagcactgggtgtccagaactatcac
ctggactgcaacgagacaaagtcctggatccgtgagaagaccaaagtaatcgagtcgact
caggaactcggtaatgacctgacaggagtcatggcactgcagcgcaagctgaccgggatg
gagcgcgacctggccgccattgaggccaagctgggtgacatgcgtggagatgcagagcgt
ctggcagctgagcatcccgaacaagccaacgctatcaaaggcaggctggaggagatcggc
actgtctgggaggagctgaaggatactatgcaaaaccgtgaggcctccctgggagaggcc
agcaagttgcagcagttcctccgtcagctggatgatttccagtcgtggctgtctcgcacg
cagacggccattgcctctgaggacatgcccaacaccctggctgaggctgagaagcttctc
gcccaacacgaaggcatcaagcacgagattgacaactacgaagaggactaccagaagatg
cgtgacatgggcgacatggtcacccagggtcagacggactcccagcacatgttcctcagg
cagaggctgcaggcgctggataccggttggaatgagcttcataagatgtgggagaaccgt
cagaacctcctgtcccagtctcacgcctaccaactgttcctcagagacacaaagcaggcc
gagaccttcctcaacaatcaggagtatgtgttggcccacactgagatgcccaccactcta
gaaggagcagaagctgccattaagaagcacgaagatgtcatgaccacgatggacgccaac
gaggagaagatcaacggcgtggtggaggctggacgcagactggccagtgatggaaacatc
aacgctgagaagattcaggagagagcgaattccattgatgacaggcataagaagaaccgt
gaggcggctgtggagctcctgatgaaacttaaagataacagagacctacagaagtttctg
caggactgccaggagctgtctctgtggatcagcgagaagatgctgacggcgcaggacatg
tcgtacgacgaggccaggaacctgcacagcaagtggctcaaacaccaggccttcatggcg
gagctccagtccaacaaagagtggctggataagatcgagaaggaaggacagcagctggtg
tccgagaagcctgagacggaggcggtggtgaaggagaagctctcggtgctgcagacgcag
tggcaggagctggagtcgaccacgcagaccaaagcgcagtgcctgttcgacgccaacaag
gccgagctgttcacgcagagctgcgccgacctcgacaagtggctggggggtctggagggt
cagatccaatccgacgactacggcaaagatctaaccagcgtcaacatcctgctgaagaaa
caacagatgctggagaaccaggtggacgtgcgtaagaaggaggtggaggagcttcagtcg
caggctcacgtgctgcggcaggagggcaaggacacggacgaggtggacgggcgacgtgag
gtggtggagaagaagttccaggagctgctcgaacctcttctgaagaggaagaactttctc
atggcttccagggagatccaccagttcaaccgtgacgtcgaggacgaaatcctctgggtc
gaggagaggatgcctctcgctaattcaacggaccatggacacaacttgcagacagttcag
atgctaatcaagaagaaccagaccctgcagaaggagatccagggccaccagccacgctgt
gacgacatcttcgaccgcagtaagaacatcgtgacggaggacagcccgagcgtggacgcc
attaaggcacgtctcgtcgagcttaaggacctctggaacctcctcagccaggagacagcg
aagagacacgagcggctggaggaggcgcatcaggcgcagcagtactactttgacgcggcc
gaggcggaggcctggatgagcgaacaggagctgtacatgatgtcagaggagaaggctaag
gacgaacagagctcagtggccatgctgaagaaacaccagatcctagagcaggccgtggag
gactacgccgagaccgtacatgagctctccaagaccagccgcggtctggtggctgaaaat
caccctgagagtgagagaataggcatgcggcagtcgcaggtggacaagctgtacgcggga
ctgaaggacctttctgaggagaggagaggaaaactggacgagaggttccggctcttccag
ctgaaccgcgaggtggatgatctggagcagtggatcgctgagagggaagtggtggcagga
tctcacgagctgggccaggactatgagcacgtgactatgcttcaggagcgtttccgtgag
ttcgcccgcgacaccggaaacatcggtcaggagcgcgttgacggcgtgaaccggatggcc
gacgagctcattaatgccggccacaccgacgcggccaccgtcgccgagtggaaggacgga
cttaacgaggcctgggcggacctcctggagctgatcgacacccgtacgcagatcctggcc
gcttcctatgagctgcataagttctaccacgacgtcaaagagatcctgacccgcatcctg
gacaagcacaagaagcttccggaagagctcggacgagaccagaacacagtggagaccctg
cagaggatgcacaccaccttcgaacatgacattcaagcactggggacgcaggtcaggcag
ctgcaggaagacgcgtcacgtttgcagtcggcgtatgccggcgataaggctgacgatatc
cagcgaagggagagcgaagtcctggaggcatggaggaacctgctggaagccagtgaaggg
cggagggcgcgcctgcttgacaccggggacaagttccgcttcttcaacatggtgcgtgac
ctcatgctctggatggaggacgtcatccgtctcatcgaggcccaggagaaacccagggac
gtgtcctccgtggagctgctcatgaacaatcaccagggcatcaaggcagagatcgacgcc
cgtaacgacagcttcaccgcctgcatcgagctgggcaagtctctgctggcacgcaaacac
tacgcatcagaggagattaaagaaaagttgctacagttgacggacaagaggaaggaaatg
attgacaaatgggaggacagatgggagtggctaagactgattttggaagtgcaccagttt
tcgcgggacgcaggggtagccgaggcgtggttgctgggtcaggagccgtacctgtccagt
agggaggtgggtcagagtgtggacgaggtggagaagttgatcaagaggcacgaggcgttc
gagaagtcggccgctacctgggaggaacgcttctccgctctggagaggctgactacgttg
gagttactggaagtgagaagaacgcaagaagaagaggagagaagaagaaaacccccgaca
ccggagccggagcaggtgatcgaggcagagcagagagaaggagagcagattgctcagaac
ggactgccgtcagaccaggagtccccacgggacggagtggacggagaaatcgtgaacggt
gtgcctgagaggagctcgaaggagccgagtcccatcccgtccccgacattaggaagggcc
aagggcagccaatcgtccaccctgccggccaaaagtcaggactctccctccgcccagctg
gagggcttcctacaccgcaagcatgagtatgagggccacaacaagaaggcatcaaacagg
tcctggcataacgtgtactgcgtcatcaacaaccaagatatgggcttctacaaagacaac
aagaatgccgggcagggcatcccgtaccacaacgagatccccgtcagcctgaaggacgcc
gtctgcgaggtcgcagtcgactacaagaagaagaaacacgtcttcaaactgagagtgaca
aacggaaacgagtatctcttccaagccaaagatgatgaggagatgaacacgtggatgcag
gctattcagaacgcagtcagtggctcctccccttctgataagtcagatgttacgcctagc
aaccagagcactccagcctccagccgcgcccacacgctccctgcatccgtctccctgacg
accgaatcgagccccggcaagcgggagaaggacaaggagaaagacaaagagaagcgtttc
agtctcttcagcaagaagaagcagtag
DBGET
integrated database retrieval system
