Clarias gariepinus (North African catfish): 128543404
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Entry
128543404 CDS
T10780
Symbol
si:dkey-110c1.10
Name
(RefSeq) unconventional myosin-Vb
KO
K10357
myosin V
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
128543404 (si:dkey-110c1.10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128543404 (si:dkey-110c1.10)
04131 Membrane trafficking [BR:
cgar04131
]
128543404 (si:dkey-110c1.10)
03029 Mitochondrial biogenesis [BR:
cgar03029
]
128543404 (si:dkey-110c1.10)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cgar04812
]
128543404 (si:dkey-110c1.10)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
128543404 (si:dkey-110c1.10)
mRNA cycle factors
P-body specific factors
128543404 (si:dkey-110c1.10)
Membrane trafficking [BR:
cgar04131
]
Others
Actin-binding proteins
Myosins
128543404 (si:dkey-110c1.10)
Mitochondrial biogenesis [BR:
cgar03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
128543404 (si:dkey-110c1.10)
Cytoskeleton proteins [BR:
cgar04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
128543404 (si:dkey-110c1.10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
Myosin_N
nSTAND3
DUF5917
AAA_22
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
128543404
NCBI-ProteinID:
XP_053369794
LinkDB
All DBs
Position
15:13540527..13557268
Genome browser
AA seq
1681 aa
AA seq
DB search
MASAELYTKGACVWVPDSEEVWVCAQLERDYQPGDQHLTLKLSDGTQVKYSVVNLASLPP
LGNPEILEGENDLTALTFLHEPAVLHNLRVRFLHYNSIYTYCGIVLVALNPYEQLPIYGE
EVIDAYSGQDMADMDPHIFSIAEDAYRTMIREEKNQSIIISGESGSGKTVSAKFTMRYFA
VVGGAAQQTSVEEKVLASNPIMEAIGNAKTTRNDNSSRFGKYIEIGFGSKGDIIGANMRT
YLLEKSRVVFQTTEERNYHIFYQLCASRDLPELRPLKLKAADHFRYTNQGQDNKISGTDD
AIELEHTRNALTILGVPPDQQMEVFRILAALLHLGNVNIHASGRGGERSYINTDDQSLVL
FSKLMGVEGPQMAHWLCHQRLAVGGELLVKPMSAQKAKEARDALAKHVYGQMFIWTVQRL
NSALRAHREQPKTVIGVLDIYGFETFDRNSFEQFCINYANEKLQQQFNRHVFQLEQEEYE
REELPWNRIGFSDNQPCITLIEGSLGLLNLLDEECRMPKGSDENWAQKLYDHHLNRSPYF
HKPRMSNAAFIVLHFADMVQYECEGFLDKNRDTIFEEPINIMRASQSELVAELFQQGSAG
GPLSASSVPANVRSGKRAPREHKLTVGFQFRQSLQLLMDTLHSTTPHYVRCIKPNDLKQA
FLFEPKRAVQQLRACGVLETIRISAAGYPSRWTYEDFFIRYRALLHDLSVQEDFRATCRK
KIPALIPDPEQYCFGKTKIFFRAGQVALLEKLRAEKLRAAGVKIQSWVRGWIQRRRYLQL
RWATLTLQRYARGAFARRLAWTLKYTRAALVIQKTYRMVKVRQLFLTTRKATITIQAFTR
GMQARHAYRMVLMERAAVCLQAWVRCWLARRWFRRVRAAVVLMQCCVRRQAARKELRKLR
AEARSVERYRELNKGMEVKLIQLQLRADQEARESTALRESLHVERQSHKTEVEQLRSTLL
KLQQQLQEQSQAVPSFTAKQEEERRRADERAAQEINQLTQEMEALKVERDSLEKERDDLA
ICLWEQEKREEESRQQLVLQAGAAEQAELEEERRRYQSLLREFTRLEQRYDNLRDMSMLS
TAEHWPGHRRTDSTVSLDPTSPISPPFGSFPDFSSSEESRRISVTSPFDKRPGSTEAPLN
ALLEDLGVSKDTGGKLQGEDLHHAYDAVRVANKFLERQLLAQRAEWEKEKIVLTRQLQEA
HARDAPVSKEPKDLMEQLEVQQRECCRLRRELKELKHTVTLRRILSVAGLTDTIKHIHTQ
DTQLLCYSVPWFSSGPAMPVFQNTANAQQHSSTALTGLLECRKRDESRLIKNLITDIRVD
VALSLAPGLAAQLIFLCVRQADYSRDETRARGLCTAALIAIKAALKKHSGDLDMTALWLK
NAYLLKDLLTQHSPTQGEAGRGEDVFPLQVELKEQVRMLGDVCIQAYQQLLSISESRLQP
IIVPAVLESETIPGQAGAVVKLVTSRKRAGSDPRPSASPDVTSLATVLRELGALHTALVR
QELPSALLEQAFRQLTHLLAACTLNSLLLRRDMCCWNRGLLIRYNVSLLEEWLRSRGLQT
GGAAATLEPLIQASQLLQMSKKSEADGKAIVQTCNALSSQQVVKILSQYTPQSDAEERVT
LNFIRIVQGLLKNRADGNPTPLLMDIRRVFPVTFPYTPPSSVSAEQLHIPEALKINFLRR
V
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggcatctgctgaactctacactaagggagcatgtgtgtgggtgccagattctgaagag
gtgtgggtgtgtgctcagcttgaacgtgactaccaacccggagatcagcacctcacacta
aagctcagcgatggcacacaggtgaaatactctgttgtgaaccttgcaagtctgccgcct
ctgggaaacccggaaatactggagggtgaaaatgacctgacagcactcacattcctgcac
gagccggctgtgctgcacaacctgcgtgtgcgcttcctccactacaacagtatctacacc
tactgtggaattgtcttggtggccctgaacccatatgaacagctgcccatctatggagaa
gaggtgattgatgcatacagtgggcaagacatggctgatatggatcctcatattttctcc
atagcagaggatgcctatcgcactatgatcagggaagagaaaaaccagtccattatcatt
agtggtgagtccggatctgggaaaacagtgtctgcaaagttcaccatgcgctactttgct
gtggttggaggagcagctcagcagaccagtgtggaggagaaagtcttggcgtccaatccc
atcatggaggccattgggaatgctaaaactactcgcaacgataacagcagcaggtttggg
aagtacattgaaattggttttggatctaaaggagatataattggagcaaacatgaggact
tacctcttggagaaatctagagttgtttttcagaccacagaggaaaggaattatcacatt
ttctaccagctttgtgcctccagagatctaccagagctgaggccactcaaacttaaggct
gcagaccattttcgatacactaaccaaggacaagataacaaaatttccggcacagatgat
gctatagagctggagcacactcgaaatgctttgactattcttggagtcccacctgaccag
cagatggaggtctttcggattttggcagctctcctccatcttgggaatgttaacatccat
gccagtggcagaggaggcgaacgtagctacatcaatacggatgaccaatctctggtgctc
ttctccaaactaatgggggtggaaggccctcagatggcccactggttgtgtcatcagcgt
ctagctgtaggtggggagctactggtaaagcctatgtcagcccaaaaagccaaagaggca
cgcgatgctctggctaaacatgtgtatgggcagatgttcatctggactgtacaaagactg
aattcagctctaagggcacacagagagcagcccaagactgttataggagtgttagacatc
tatgggtttgagacctttgacagaaacagttttgaacaattctgcattaactatgccaat
gagaaacttcagcaacagtttaaccggcacgtgttccagctggagcaggaggagtatgag
cgagaggagctaccctggaaccgtatcgggttcagtgataatcagccctgcatcaccctc
atagagggctctctgggtctcctgaacctgctcgatgaggaatgcaggatgcccaaaggc
tcagatgaaaactgggcacaaaaactctacgaccaccacctgaaccgaagcccctacttc
cataagccacgcatgtccaatgctgcatttattgtgctccatttcgctgacatggtccag
tatgaatgcgaaggatttttagataagaatcgtgacacaatatttgaagagcccattaat
ataatgcgagccagtcagtcagagctggttgctgagttgttccagcaggggtcagctggg
ggtcctctctctgcctcatctgtgcctgcgaatgtgcgttcaggaaaaagagctccccgt
gagcacaagctgacagtgggcttccagttccgccagtctctgcagctcctgatggacacc
ttgcacagcaccaccccacactatgtccgctgcatcaaacccaacgacctcaaacaggct
tttctgttcgagcctaaaagggcagtacaacaactacgagcatgtggtgtgctggagaca
attcgcatcagtgctgcaggctacccatccaggtggacatatgaggacttcttcattcgc
tatagagctctccttcatgatttgtctgttcaggaagattttcgggcaacctgtcgaaaa
aaaatccctgccctcattcctgaccctgagcagtattgttttggcaagacaaaaatattc
tttcgggctggtcaggtggccttgctagagaagctgagggctgagaagctacgggcagcc
ggggtaaagatccagagctgggtgagaggttggattcagcgcagacgctacctgcagcta
cgctgggccactttgactctacagagatacgccaggggagcatttgcccgcagattggct
tggacactgaagtacacaagggctgcactggtcattcagaagacataccgtatggtaaaa
gtaaggcagctcttccttactaccagaaaggccacaataactatccaggccttcaccagg
ggcatgcaggctcgccatgcatacagaatggtgctgatggagagggcagcagtgtgtctg
caggcctgggttcgctgttggcttgctagacgttggttcaggcgtgtaagggctgcagtg
gtgctaatgcagtgttgtgtgcgcagacaggctgcacgtaaggagttgcggaagctgcga
gcagaggctcgctctgtggagaggtacagagagctcaacaagggcatggaggtcaaactc
atacaacttcagctgcgtgctgaccaggaggccagagaaagtacagctcttcgtgaatct
ctccatgttgaacgtcaatcacacaagacggaggtggagcagctgcgctcaactcttctc
aaactgcagcagcagctccaggagcagagccaagctgttccttcttttactgcaaaacag
gaggaagagaggagaagagctgatgagagagctgctcaagagataaaccagctcacacag
gagatggaagctttgaaggtggagagagactctttggaaaaggaaagagatgatctggct
atttgtttatgggagcaggagaaaagggaagaagaaagcaggcagcagttggtgttgcag
gctggagcagcagaacaggccgagctggaggaggagagaaggagatatcagagcttactg
agggagttcacacgtttagagcagagatatgacaacctgcgggacatgagcatgctctcc
actgctgagcactggcctggacacagaagaactgattccactgtttctttggaccctact
tctcccatatctccaccctttggaagttttcctgacttttcctcttctgaggagagcagg
aggatcagtgtcacctcaccctttgacaagaggcccggcagcacagaggcacctttgaac
gcattattggaggatctgggtgtgtcaaaggatacaggaggaaagctgcaaggggaggac
cttcaccatgcttacgatgctgtcagggtcgccaacaagttcctggagaggcagctcctg
gcccagagagctgagtgggagaaggagaaaatcgttctcactcgacagctccaggaagcc
cacgccagagatgctccagttagcaaagagccaaaggatctaatggagcagctggaggtt
cagcaacgagagtgctgcaggcttagaagggaactaaaggagcttaaacacaccgtaaca
ctcaggagaattctgtctgttgcaggtttgacagataccattaaacacatccacacacaa
gatacacagcttttatgttacagcgtcccttggttctcctcaggtccagccatgcctgtg
tttcagaatacagcgaatgcacaacaacactcgagcactgcattgaccggactactggag
tgtaggaaaagagatgagagcagattgataaaaaaccttattacagatatacgagtggat
gtggctctttctctggcaccgggacttgcagcgcagctcatcttcctgtgcgtgagacaa
gcggactacagcagggatgagactcgagctcgaggcctctgtaccgctgcactgattgcc
atcaaagcagccctaaaaaagcacagtggtgatttggacatgacggctttgtggctgaag
aatgcttacctgctcaaagacctgctcacccagcattcacccacacagggagaggcaggg
agaggtgaggatgtgttcccactacaggtggagctgaaggagcaggtacgaatgctgggt
gatgtgtgtattcaggcctaccagcagctcctttccatctctgagagccgcctgcagccc
atcattgttccagccgtgctggagagtgagaccatcccaggccaggctggagccgtggta
aagctggtcacctctcgtaagcgtgcgggttcagatcctcggccttcagcctctccggat
gtgaccagcctggcgactgtgctgagggagctgggagctctgcacactgcactggtgcga
caggagcttccctccgccctgctggaacaggccttccgccagctcacacacctgctcgct
gcctgcacactcaacagcctgctactgcgcagagacatgtgctgctggaaccgtggcctt
ttgatccgctataatgtaagtttgctggaggagtggctgaggagtcgtgggctgcagaca
gggggcgctgcagcaacactggagcccctcattcaggcatcacagctcctccaaatgagc
aagaaatcagaggctgacggaaaggccatagttcaaacctgcaatgccctgtccagccag
caggtggtgaagattttatcacagtacactccacagagtgatgctgaagagagagtcaca
ctcaatttcattcgcattgttcaggggctactgaagaatcgtgcagatggaaaccccaca
ccactgctgatggacatccggagggttttccctgtcaccttcccatacacaccaccttca
tcagtcagcgctgagcagttgcacatccctgaggcactcaagatcaatttcctgcgcaga
gtctga
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integrated database retrieval system
