Clarias gariepinus (North African catfish): 128544076
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Entry
128544076 CDS
T10780
Symbol
lrrc4ba
Name
(RefSeq) leucine-rich repeat-containing protein 4B
KO
K16360
netrin-G3 ligand
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04514
Cell adhesion molecule (CAM) interaction
cgar04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
128544076 (lrrc4ba)
04517 IgSF CAM signaling
128544076 (lrrc4ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cgar04515
]
128544076 (lrrc4ba)
Cell adhesion molecules [BR:
cgar04515
]
Immunoglobulin superfamily
NGL family
128544076 (lrrc4ba)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
LRR_9
LRR_14
ig
V-set
LRRNT
Ig_2
VEGFR1-3_N_Ig-like
LRR_EndoS
Motif
Other DBs
NCBI-GeneID:
128544076
NCBI-ProteinID:
XP_053370006
LinkDB
All DBs
Position
16
Genome browser
AA seq
728 aa
AA seq
DB search
MRITTVTGLLNPAPYFFLLAQLLFWLLLLGQDIAGATSTCPTPCSCSNQASRVICTRRNL
DEVPENISNNTRYLNLQENSIQVIRSDTFKHLRHLEILQLSKNQIRQIEVGAFNGLPNLN
TLELFDNRLTLVPSQAFEYLSKLRELWLRNNPIETLPGYAFHRVPSLRRLDLGELKKLDY
ISDAAFVGLVNLRYLNLGMCGLKDIPNLTPLIRLEELELSGNRLEIIRPGSFQGLESLRK
LWLMHSQMSVIERNAFDDLKSLEELNLSHNSLHSLPHDLFTPLQKLERVHLNHNPWVCNC
DVLWLSWWLKETVPSNTTCCARCHAPPYLKGKYIGELDQSHFTCYAPVIVEPPTDLNVTE
GMAAELKCRTGTSMTSVNWITPNGTLMTHGSYRVRISVLHDGTLNFTNVTLRDTGQYTCM
VTNSAGNTTATAVLNVTAADTSVNYTYFTTVTVETVESTGEEDSAIRLINETIIHIPGST
TSGRLWHDGIPTTASSLSVFGSSSSPRATKPTFTVPVSEPSYPTGLDDVMKTTKIIIGCF
VAITFMAAVMLVVFYKLRKQHQLHKHHGPARAIEIINVEDEIGASASVRGSGISGGSTMP
QAGSSGGSQSLRLHHPEIVNLPNLARTDHLNHYYKPHHFNNNMMSLGLSGSSGIGLNNNN
NPCSQGQPTPISCSQVPVSVSSIPSSMPLPTLGIHGSLKGLMGKGQNPQIEPLLFKSGSK
ENVQETQI
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgcggatcaccacggtgaccggccttctcaaccccgccccttactttttcctattggcc
cagctgctgttttggctcctcctcctgggccaagacattgcaggagccacatcgacctgc
ccgacaccttgcagctgttccaatcaggcgagccgagtcatctgtacaagacgaaacctg
gacgaggtcccggagaatatatccaacaacacgcgatacctaaacttacaggagaactcg
atacaggtgataagatctgacaccttcaagcacttgcgacacttggagattctccagctt
tccaagaaccagattcgtcagattgaagttggtgcgtttaatggcctcccgaatctcaac
acgttggaactgttcgacaaccggctcactctggtgccatcacaagcgtttgagtatctc
agcaagcttcgtgagctctggctacgaaacaaccccatcgagacgttgcctggctatgcc
ttccaccgtgtgccctcccttcgccgtctcgatctgggcgagcttaaaaagctggactac
atttcagacgctgcctttgtcggccttgttaatctgcgctacttgaacctgggcatgtgc
ggtctgaaggacatccccaacctgacacctttgatccgactagaggagctggagctttct
ggaaacaggctggaaatcataagacctggatccttccaaggcctggagtccttacgcaaa
ctttggcttatgcactcccagatgtctgttattgagcgtaatgcttttgatgacctcaag
agtctagaagagctgaatctgtcacacaattccctgcactcacttccccatgaccttttt
accccattgcagaagctagagagagtacacctgaaccacaatccctgggtatgtaattgt
gatgtgttatggcttagctggtggctgaaagaaactgtaccaagtaatacaacttgctgt
gcacgctgccatgcaccaccctacctgaagggcaaatacattggggaactggaccaaagc
cacttcacttgttatgcccctgttattgtcgaacctcccactgacctcaatgtgaccgaa
ggtatggctgctgaactcaagtgtcgcaccggaacctccatgacatctgtaaactggatt
acaccgaatggaactctgatgacacatggatcataccgtgtccgaatctctgtgctacat
gatggtactctgaatttcacaaacgtcaccttgcgtgacactggtcagtacacctgcatg
gtgaccaactcagctggcaacaccacagcaaccgctgtcttaaacgtcacagcagcagat
accagtgtcaattacacttatttcactacagtaactgttgaaactgtagaatccacagga
gaagaggattccgccatacgtttgatcaatgaaactatcatccacatccctggttctaca
acttctggacgtctctggcatgatggcatcccaacgacagcttcttctttatcagttttt
ggatcgtcatcttctccgcgagcaactaaacctacatttactgtcccggtctctgagccg
agctacccgaccgggctggatgatgtaatgaagactactaagattataattggctgtttt
gtagctatcactttcatggcagctgttatgctggtagtcttttacaagctgaggaagcag
catcagctgcacaagcaccacggaccagcgagagcaattgagattatcaacgtggaggac
gagattggtgccagcgctagtgtccgtggaagtggaatctctggtggttccactatgccc
caggccggatccagtggtggaagccaaagcttgaggctgcatcatccagagatcgtcaac
ctacccaacctggctcggacggaccaccttaaccactactataagccccaccacttcaac
aacaacatgatgagtttggggctttctggaagctctggaattggtctcaacaacaacaac
aacccttgttcacagggccagcccacgccgatctcctgttcccaggtgccagtctcagtg
agctctattccatcctcaatgcccctgcctaccctaggtatccacggatcactcaaaggc
ctaatgggtaaagggcaaaaccctcaaatcgagcctttactctttaagagtggctccaag
gagaatgtccaagagacccagatctga
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