Clarias gariepinus (North African catfish): 128544227
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Entry
128544227 CDS
T10780
Symbol
helz
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
cgar Clarias gariepinus (North African catfish)
Brite
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
128544227 (helz)
3'-5' decay
Other 3'-5' decay factors
128544227 (helz)
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
128544227
NCBI-ProteinID:
XP_053370254
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Position
16:13796614..13845946
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AA seq
1894 aa
AA seq
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MEDRRPQKSCEEAIGSLVRQDYNAAVAHSTDALLALGATPPTPNATLLHKCALLYRIAAL
LQLKKYDQADEDCKHVLAEELGKDKGSFRSGLQKMLLDGSLQEVRTILSKALYGEPLNGI
MTKDMTRLKMLLSELEAVSSKMVTEQQGETEEDIQEGWQFRPPPRGVTSSEEYTLCKRFL
EQGLCRYGAQCTSAHSQEELTEWQQRYASRLIRLKQQQDGKHYTENYTEALIEKWLNSLT
PEKVLNDCVDGVTVEHSSDLSVIVNTKKSSHSWTFSLYCKPVRMLHRIVLLYDANRPHFF
ITAVSAGDSSTQVPQQVYEGGCQEWTGVGLLQNGMDHCLYTVEVGFITEIFGTFSQTVVF
DFGSEPVLVQRLTVNAGSDENLEHLNQARQNLLMTAKPWDTCKTIVEFTPNENTELERSL
LSRYQIPQSEDQLFTQSVLDKTLTRENYQSRLHDLLYIEELAQYKEVSKFNIKVNLQLVA
SFMLTGLSGGANYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNSVLLLPLGPDGTSQGQ
PAGARERVFKALIEEKTKDSIFLRICRDCCEELNLIADTELQVELQFQLNRLPLCEMHYA
LDRLRDNSILFPDVGLTPIIPWSPNSGKPSQKSGGYYTRQWDEQLDPRLNAKQKEAILAI
TTPLSINLPPVLIIGPYGTGKTFTLAQAVKHILKQPDTRVLICTHSNSAADLYIKDYLHP
YVEAGNPHARPLRVYFRNRWVKTVHTVVRQYCLISEVYGTFQMPTRQDIERHRVVVVTLS
TSQHLCQLDLEPGLFTHMLLDEAAQAMECETIMPLALANKSTRIVLAGDHMQLSPFVYSE
FARERNLHVSLLDRLYEHYPSEYPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPA
HKDFHPLTFFTARGEDMQEKNSTAYYNNAEVFEIVERVEEMRKKWPVAWGKLDEGSIGVV
SPYSDQVLRIRNELRKKRMPEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQMAIKRKE
QLVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWERFISICHD
NGSLHGITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRPQQPPGPGKHQHSPPKVKGP
LANHSEHFPPEGFVQSSPAVLMGNPIQAFTPTGGGAPPSGKSPSPVQRIDPHTGASILYV
PAVYGGNMVMPMSLPLPWAGYQNRFAMDPRIMSHQAAMAAYNLNLRPAVSRASPVLYGLN
QPSPLGIGQLPSTDKDLLQEPTANGKVDINGKVEHGRLLTPERKAADLKDKQGESEPVQN
KSPETHGSLVFPSSRLLRKDPPAQRPPLGFPLPPPHPAFAPHAPPGPLAHYGLPRPPLRV
QTQQPQPSGFPPSFFSGHPLAQRALHSPGLDGLDGGESLMGTVSDEMKNVVRGMPPQHQP
HQQPMRLNSFGEESLDSLLGDSLDGQSCPGMETLAPQPQQQQPPVRLGQWNEPGPFLQGA
VPPYPLPQQLAHLGQPGMRIPQQLLRANWGLGSTAEDEHRAPLHRYPGLPRELLPQEAYE
PREAAEMPPPQSRLLQYRQVQQAHIAGELPSPSTATSVLSSSTPSSSNTHNHPLAPGPFP
YSETSREPPFHQQQAFSQAALPLPHEHVPVKYLLPEAHWHHAGTQQSATLAFGLQQGPFT
QLQLQQHKQQQQQLQAPHNALHSLEEYEPRGPGRPLYQRRISSSSPQPYGESVVQCKESQ
DPTACFTYPPADLWPNPGPAPLHNIPCNGASHLVPQRDILVSKAVNAAEEHTQAECVQQP
PHSAGLAALQQHGQFPALLPSKQTPPDPGGMGSMPTSGHNKPPAMSYASALRAPPKPRCP
LPEQTKKNSDPISLLQDLSIGSSNSSNGYYSYFK
NT seq
5685 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaggaggccccagaagtcatgtgaagaggccattggatcgttagtgaggcag
gactataatgctgcggtggcccacagcacagatgccctgctggccctgggagcgacccca
cccacccccaacgcaacccttctccacaagtgtgcactcctctaccgcatagcagccctg
ctacaactgaagaagtacgatcaagctgatgaagactgtaagcatgtgctggctgaggag
ctgggtaaggacaagggaagtttcaggtctgggctgcagaaaatgttgctggatggaagc
ttacaggaagtccgaaccattctttctaaagctctgtatggagaaccactgaatggaatc
atgactaaggatatgacaaggttgaagatgcttttgtctgaattggaggctgtgagcagt
aaaatggtgactgagcagcaaggagaaacagaagaggacattcaggaaggttggcagttt
cggcctcctcctcgaggggtcactagcagcgaggagtacacgttatgtaaaaggttccta
gagcaggggctgtgtagatatggtgctcagtgcacctcagcccactctcaggaggagctg
accgagtggcagcagcgctatgcttccagactcatccgcctcaagcaacagcaagatggg
aagcattacactgaaaactacacagaggccctcatagagaaatggctcaactcgctcacg
ccagagaaagtgcttaatgactgtgtagatggagttacagtggagcacagctcagatctt
tcagtcatcgtcaacaccaagaagtcatcccattcctggacattctcactttactgcaag
cctgtccgcatgttacaccgcatcgtgttgctctatgatgccaaccgaccacacttcttc
atcacagccgtgtccgcaggcgactcctccacccaagtaccccagcaggtgtatgagggt
ggctgtcaggagtggactggagtaggcctgctgcagaatggcatggatcactgcctctac
actgtggaggtggggttcataaccgaaatcttcggcactttcagccagactgtagtgttt
gatttcggctctgagcccgtgctggtgcagcgattgacggtgaatgcggggtctgatgaa
aacttggagcatttgaatcaggcaaggcagaatcttctgatgacagcgaagccctgggac
acctgcaagaccatcgtggagttcactcccaatgagaacacggagttggagcgcagtctg
ctcagccgctatcagatcccacagtccgaggatcagctcttcacccagtctgtgttggac
aaaactctcacacgtgagaactatcagtcccgcctgcatgacctgctctacattgaggag
cttgcacagtacaaagaagttagcaagtttaacatcaaggtaaatctgcagctggtcgcc
agtttcatgctgactggattgtctgggggtgctaattatgcccaaaacggtcagctgttc
ggccgctttaaactaacggagacgctgtctgaggacacgttggcaggaaggctggtgatg
acgaaagtgaattcggtgctgctattgcctttgggcccggatgggactagtcaaggacag
cctgccggtgccagggagcgtgtctttaaggccttgatagaggaaaagaccaaggactcc
atattcctgcgcatttgcagggactgctgtgaggagctcaatctgatagcagacacggag
ctgcaggtggagctgcagtttcagctcaacaggcttcccctgtgtgagatgcattatgct
ctcgaccgcctccgtgacaacagcatcctatttcctgatgtcggcttaactcctataatc
ccctggagccccaacagtgggaagccttcccagaagagtggaggttattataccaggcaa
tgggacgagcagttggaccctcgcttaaatgccaagcagaaggaggccattttggccatt
actactccactgtcaatcaatcttcctcccgtgctaatcattggaccctatggcacaggc
aaaacattcacgttggctcaggcagttaaacacatcctcaaacagcctgacacgcgggtc
ctcatctgcactcattcaaacagtgcagcagatctgtacatcaaagactaccttcatcca
tatgtggaggcaggcaatccacatgcaagacctctcagggtttactttaggaaccgctgg
gtaaaaacggtgcacacagtggttaggcagtattgcctgatctctgaagtttacggcacc
ttccagatgcccactcggcaggacatagagcgccaccgtgttgtggtagtgacactcagt
acgtcccagcatctctgccagcttgatctggaacctgggctctttacacacatgttgttg
gacgaggcagctcaggcgatggagtgtgaaacgattatgccattggcgctggctaataag
agcacacgcatcgtccttgctggagaccacatgcagctcagtccatttgtgtacagcgag
tttgcacgggagaggaacctacacgtgtccctgctggaccggctgtatgagcactatccc
tccgagtacccctgcaggatcctgctgtgtgaaaactaccgctcccatgaggcaatcatc
aactacacatcagagcttttctacgagggcaagctgatggccagcggcaagcagcctgcg
cataaggacttccaccccctgaccttcttcacggctcgtggtgaggacatgcaggagaag
aacagcacggcctactacaacaatgctgaggtgtttgagattgttgaacgtgtggaggaa
atgagaaagaagtggccggtagcgtggggaaagctggacgaaggcagcattggcgtggtt
tccccctactcggaccaagtgcttcgcatccgaaacgaactccgcaaaaaacgcatgcct
gaggtcagcgtggagcgagtgctcaacgtccagggtaagcagttccgcgtgctgttcctg
agcaccgttcgcactcgccacacctgtaagcacaagcagatggcaatcaagaggaaggaa
cagctggtggaagactccaccgaggacctggactatggcttcctatccaactacaaactc
ctgaacactgccatcacacgagctcagtccctagtggctgtggtgggagaccccatagca
ctgtgctcagtgggccgctgcagaaagttctgggaaaggttcatctccatctgccatgat
aacggcagtctgcacggaatcactttcgagcagatcaaggcccagctggaggctctggag
ctgaagaagacctacgtgctgaacccactggcccctgagttcatccctcgagccctgaga
ccccagcagcccccgggacctggcaaacaccagcactccccacctaaggtgaaaggaccg
cttgccaatcattcagagcactttcctcctgaaggctttgttcagtccagtcctgctgtt
ttaatggggaatcccatccaggcctttactccaacagggggaggagcacctccttctggc
aaatcccccagccctgtacagcgcatcgaccctcacactggagccagcatcctctacgtg
cccgctgtctatgggggcaacatggtgatgcccatgtctctgccattgccatgggcaggc
tatcaaaaccgctttgccatggacccccgcatcatgagccaccaggcagccatggcagct
tacaacctaaacttgcggcctgccgtcagtcgggcatcacctgtgctttatggtctgaac
cagccatccccgcttggcattggccagctgccatccactgacaaggacctgctgcaggaa
cctactgccaatggtaaggttgacattaatgggaaagtggaacatggcaggctcctgaca
cctgaaaggaaagctgctgacctgaaggacaaacagggagagtctgagccggttcagaac
aaaagccccgaaacgcatggcagcctggtgtttccctccagccgtcttctgcgtaaggac
ccgcctgctcagcgtcctccactcggcttccctttaccccctcctcacccagcatttgct
ccccatgcccctcccggccccctggcacactatgggcttcccagacctccccttcgtgtt
cagacccaacagccgcagccctccggcttccctccctcatttttcagcgggcaccctctg
gcccagcgcgccctacactctccaggactagacggtcttgacggaggggagagcctgatg
ggcactgtgtctgacgaaatgaagaacgttgtgagaggaatgcctccccagcaccagccc
catcagcagccgatgcgcctcaacagctttggggaggagagtcttgactcactgcttggc
gactctctggatggtcaaagctgtcctggcatggagactctggctcctcaaccgcagcaa
cagcagccgccggtgcgtctaggccagtggaatgagcccggacccttcttgcaaggtgct
gtgcctccttaccccttgccccagcagttggcacacctgggtcagcccggtatgcggatc
ccccagcagctgctccgtgccaactggggcctgggttccactgctgaggacgagcaccga
gcgcccctgcacaggtatcctgggctcccacgtgagctgctccctcaggaggcgtatgag
cctcgtgaagctgctgaaatgccccctcctcagtcacgcctgctacagtatcgacaggtg
cagcaggcccacattgccggcgagctgccctcaccttctactgccacctctgtcctctct
tcatccacccccagcagttccaacacccacaatcatcctttagccccggggcctttccct
tactcagagaccagccgtgagcccccttttcaccagcaacaggccttcagccaggccgcc
ctccctctaccccacgagcacgtgccagtcaagtaccttctgcctgaggctcactggcat
catgccgggacacagcagtccgcgacgctggcatttggcttacagcagggccccttcaca
cagcttcagcttcaacagcacaaacagcaacaacagcagctccaggccccacacaatgcc
ctgcacagtctagaagagtatgaaccgcgagggcctggacggcctctgtaccagaggcgg
atttcatccagctctcctcagccatacggggagagtgtggtgcagtgtaaggagtctcag
gatcccaccgcctgttttacgtacccccctgcagacctgtggcctaacccaggccccgct
ccactccacaacattccatgcaatggagcgagtcacctcgtccctcagagggatatttta
gtttctaaggcagtgaatgctgcagaggaacatacccaggctgagtgtgtgcagcagcct
cctcactccgctggccttgcagcgcttcagcagcatggacagtttccagccctcctgccc
agcaagcagaccccgccagacccaggaggaatgggctccatgccaacctcaggccacaac
aaaccccctgccatgtcctatgccagcgccctccgagctccccctaagccccgctgcccg
ctgcccgagcagaccaaaaagaacagcgaccccatctctctgttacaagaccttagcata
gggagttccaatagtagcaatggctattactcgtattttaagtaa
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