Clarias gariepinus (North African catfish): 128544364
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Entry
128544364 CDS
T10780
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03020
RNA polymerase
cgar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
128544364 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
128544364 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgar03021
]
128544364 (polr2b)
03400 DNA repair and recombination proteins [BR:
cgar03400
]
128544364 (polr2b)
Enzymes [BR:
cgar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
128544364 (polr2b)
Transcription machinery [BR:
cgar03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
128544364 (polr2b)
DNA repair and recombination proteins [BR:
cgar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
128544364 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
128544364
NCBI-ProteinID:
XP_053370381
LinkDB
All DBs
Position
16:complement(29410012..29420408)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRFLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPKREECQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRLPYACKLLFQELMSMSIAPRMMTT
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgatcaagacgaagatatccagtatgatgaagatgatgatgagatcactcccgat
ctgtggcaggaagcctgctggattgttatcagctcctacttcgatgagaaagggttggtt
cggcagcagctcgattcgtttgacgagttcattcagatgtccgtccagaggatcgtggag
gacgcgccacccatcgacctgcaggccgaggcccagcacacgtccggagaggtggaggaa
ccgcctcggttcctgctgaagttcgagcagatctacctgtccaagccgacacactgggag
cgagacggcgcaccttcacccatgatgcccaacgaagcccgactccgaaacctcacatac
tctgctccgctctacgtggacatcaccaaaaccatcataaaggagggagaggagcagcag
cagacgcagcaccagaaaaccttcatcggcaaaattcccatcatgctccggtccacctac
tgcctgctgagcggcctgacggaccgtgacctgtgcgagctgaacgagtgtcctctcgac
ccgggcggatacttcatcatcaacggctccgaaaaggtgctgatcgctcaggagaaaatg
gccacgaatacggtgtacgtgttcgccaagaaggactcgaagtacgcctacacgggcgag
tgcaggtcctgtttggagaactcctccagacccaccagcaccatctgggtcagcatgatg
gcccgaggaggacagggagtgaagaagagcgcgatcggtcagaggatcgtctccaccctg
ccgtacatcagacaggaagttcccatcatcatcgtgtttcgggcgctgggctttgtgtcc
gacagagacatcctggagcacatcatctacgacttcgatgatcctgagatgatggagatg
gtgaagccatctctggacgaagcgtttgtgattcaggagcagaacgttgctctgaacttt
attgggtccagaggggccaaacccggtgtcactaaagagaggagaattaaatacgctaag
gaggttctgcagaaggaggtgctgcctcatgtgggcgtgtccgacttctgcgagaccaag
aaggcgtactttttagggtacatggtgcacaggctcctgctggcggctctgggccgaaga
gagctggacgacagagatcactacggcaacaaaagactggatctggccggcccgctactg
gcgttcctcttcagaggaatgtttaagaacctgctgaaggagatcaggatctacgctcag
aagttcatcgaccgagggaaagacttcaacctggagctggccatcaagacgcgcatcatc
tcagacggcctgaagtactcgctggccaccgggaactggggcgacgtcaagaaagcccat
caggctcgagccggggtgtctcaggtgttaaacagactgaccttcgcctcgacgctgtct
cacctgcggcgcgtcaactcgcccatcggccgagacggaaagctggcaaagccgaggcag
ctccataacaccctgtggggtatggtgtgtcccgccgagacgccagagggccatgctgta
ggtctggtgaagaacttggccctgatggcgtacatctccgtgggttctcagccgtccccc
atcctggagttcttggaagagtggagcatggagaacctagaggagatctcacctgctgct
attgcagacgctacgaagatcttcgtgaacggctgctgggtgggaatccacaaagacccc
gagcagctgatgaacactttgaggaagctcaggaggcagatggacatcattgtgtccgag
gtgtcgatgatccgggatatccgagagcgagagatccggatttacacggacgcagggagg
atctgtcgcccgctgctcattgtggagaagcagaagctcttgctgaaaaggcgccacatc
gatcagctcaaagagcgagagtacaacaactacagctggcaggacctggtggcgagcggc
gtagtggagtacatcgatactctggaggaggagactgtgatgttggccatgaccccggat
gacctccaggagaagggcgtggcctactgctccacttacacacactgtgagatccatccg
tctatgatcctgggagtgtgtgcatccatcattcctttccctgatcacaatcagtctccc
aggaacacctaccagtctgctatggggaagcaggccatgggtgtgtacatcaccaacttc
catgtgcgcatggacaccctggctcacgtgctgtattacccccagaagcccctggtcact
acacgctccatggagtacctgcgcttcagagagctgccagcaggcatcaattccatcgtg
gctattgcatcgtacacgggttacaatcaggaggactcggtcatcatgaaccgctccgcc
gtggaccgaggcttcttcagatccgtgttttatcgctcctataaagagcaggagtcaaag
aaaggcttcgaccaggaggagattttcgagaaacccaagcgtgaagagtgtcaaggaatg
cgccacgccatctacgacaagttggacgacgacggcctgatcgcgccgggcgtgcgcgtt
tccggcgaggacgtgatcatcgggaagacggtcaccctacccgaaaacgacgacgagctg
gacagtacgaaccgccgctacaccaagagagactgcagcacgttcctgcgcaccagcgaa
accggcatcgtcgaccaggtcatggtgacgctcaaccaggaggggtacaagttctgcaag
atccgggtgcgctcggtgagaatccctcagatcggagacaagttcgccagccgacacgga
cagaaggggacctgcgggatccagtacaggcaggaggacatgccgttcacatgtgaagga
attacccccgacatcatcatcaacccccacgccatcccgtcccgaatgacagtcggtcac
ttgatcgagtgtctgcaggggaaggtttctgcgaataaaggcgagatcggtgacgccact
ccgttcaacgacgctgtgaacgtgcagaaagtgtccaacctgctgtctgaatacggctac
cacctcagaggaaacgaggtgctgtataacggtttcacgggtcgcaagctgacctctcag
atcttcctcggccccacttactaccagcgcctcaaacacatggtggacgataagatccac
tcgagggcacgaggccccgtccagatcctcaacaggcagcctatggagggcagatcacga
gatggaggtctgcgtttcggagagatggagcgagattgtcagatcgctcacggcgcagct
cagttcctgagggagcgtctgttcgaggcgtctgatccctaccaggtgcacgtgtgtaac
ctgtgcgggctcatggccatcgccaacacgcgcacacacacctacgagtgcaggggctgc
cgcaacaagactcagatctcgctggtgcggctcccgtacgcctgcaagcttctgttccag
gagctcatgtctatgagcatcgccccacgcatgatgaccacctaa
DBGET
integrated database retrieval system
