KEGG   Clarias gariepinus (North African catfish): 128544427
Entry
128544427         CDS       T10780                                 
Symbol
skic8
Name
(RefSeq) SKI8 subunit of superkiller complex protein
  KO
K12602  WD repeat-containing protein 61
Organism
cgar  Clarias gariepinus (North African catfish)
Pathway
cgar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cgar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    128544427 (skic8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cgar03019]
    128544427 (skic8)
Messenger RNA biogenesis [BR:cgar03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     128544427 (skic8)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_EML_2 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_EML WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_ACSF4 Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_EIPR1 eIF2A Beta-prop_NWD2_C Beta-prop_VPS8 Beta-prop_WDR41 Tricorn_2nd Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_DCAF4 Beta-prop_Nup120_160 Ge1_WD40 Beta-prop_HPS5 NBCH_WD40 Cytochrom_D1 PROPPIN WDR54 Beta-prop_NUP159_NUP214 WD40_like VPS8_N WD_LRWD1 Beta-prop_pof12 Beta-prop_IFT122_2nd Nucleoporin_N DUF2415
Other DBs
NCBI-GeneID: 128544427
NCBI-ProteinID: XP_053370503
LinkDB
Position
2:complement(32563486..32570673)
AA seq 305 aa
MSTQYSILFKQEHAHDDAIWTAAWGRSEKDGSETIITGSLDDMVKVWKWSDEKLELQWTL
EGHQLGVVSVDISQNGAIAASSSLDAHIRLWDLETGKQVKSMDAGPVDAWSVAFSPDSKY
IATGSHLGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVSF
SPDNTHFVSSSSDKSVKVWEASTRACVNTFFDHQDQVWSVKYNSTGSKIISAGDDRAIHI
YDCPM
NT seq 918 nt   +upstreamnt  +downstreamnt
atgagcactcagtacagcatactgttcaagcaggagcatgcccatgacgatgccatatgg
acggcagcatgggggagaagtgagaaggacggatcagaaactatcatcactggctctctg
gatgacatggtgaaagtgtggaaatggtcagatgagaagctggagctacagtggactctg
gaaggccaccagctgggtgtggtgtccgtggacatcagccagaatggcgccatcgcggcc
tccagctccctggatgctcacatccgtctttgggacctcgagactggcaaacaggtcaaa
tccatggatgcaggacctgtcgatgcctggagtgtagcattttcaccggattcgaaatac
attgccacgggcagccatcttggcaaggtgaacatctttggcgttgagagtgggaagaaa
gaatactccttggacaccagagggaaatttattctcagcatcgcctatagcccagatgga
aagtatttagccagcggtgccattgatggaatcattaacatctttgacattgctactggg
aagctcctccacacgctggaaggacacgctatgcccatccgctctctcacgttctctcct
gactcacagctcttagtcacagcctcagatgatggttacatcaagatttatgatgtacaa
catgctaacctggcaggcaccctgagcggccacgcatcttgggtcctcaacgtttccttt
tcacctgataacacacactttgtttccagctcgtcagataagagtgtgaaggtgtgggag
gccagcaccagggcgtgtgtgaacactttctttgaccatcaggaccaggtatggagcgtg
aagtacaacagcactggctccaagatcatttcggccggagacgacagagccatccatata
tacgactgtcccatgtga

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