Clarias gariepinus (North African catfish): 128544739
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Entry
128544739 CDS
T10780
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cgar01001
]
128544739 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cgar04054
]
128544739 (ciita)
Enzymes [BR:
cgar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
128544739 (ciita)
Protein kinases [BR:
cgar01001
]
Serine/threonine kinases: Other
TAF1 family
128544739 (ciita)
Pattern recognition receptors [BR:
cgar04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
128544739 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_8
AAA_25
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
128544739
NCBI-ProteinID:
XP_053370964
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All DBs
Position
16:30619250..30641746
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AA seq
1152 aa
AA seq
DB search
MVPFQEVLSEVRRVLQGVNANLLPSLLSQLVEAEIFSAQYYQRLFSENLSGVEVDVDDLA
RRLALPVWEKWDASKVILSSVLTENKPDIHEHEDVISVDQVETIPDRLLLDLIISTPLEE
FPFEEFLDESYSEEVWDDIPDGSEDKSTLVCEVCDENSSVRKRQTRKRRVTERPSKQTPR
PKRNKKAPPSSEFPPEVNMAVQEGDFHVAGVPSLVHFPLTIATAASLMPSGSPTMQIIQT
FNPLSPPVINGILPVGHTYVLVSPQSIAPMPAPVPVPQTAPLSPVGGTVAPVELSMSIHP
VCSLSDTASRGQSPSQPDPVSPLRDKSPSKDFHSTPQQIKKMPVIPKNVKDFIQHLKSHI
GEACSRLQGGMSMESHYIDTALVQRKLIIRTGKNANKCLEKELVVLSDSERKKATMHRSH
VFQNCGTNNKHLITVLAKAGMGKSTFIQRLALDWSTGGLRQFQFIFLLNCKVLNLTQAGF
SLKSLLFDSSTSPQCDDSDAVFKHILTFPEKVLVVFDSFDDVKDLEGLLQSPATSVTDGN
YSIRQLFSGLFQKKILSGCTLLIATRPKDVLNQLLRKVDSILELCCFSPKDIETYVSNYF
VDASEKEEALKKLESQKYIFSLCSNPLLCHLTCFLLEHLKNSGDNLPSTLTDLYQRVVSQ
LVELNEDLQGSKQDTAQLCNIAWGGFKTQTSLLNQNLNKTLVDYGLNSGILMTHTQCDKP
DKNQVIYFANLFVQTLLSAMLLVHSKELNDKTLLAQISLYQRKRKFQGEWQDVLQRFVMG
LLFQKSTIHCSRVFQSSTDLQVKRKAVEVHLENLKPAEMIPSRLLELFHCVYEARNVKFT
KLLAKNLPENLSFCGAQLSPVDAYVVWHHLSHTKGLKQTFSIDLRDTCVPLSGLKDLVAL
NCVASFRAPTMDTINLWEDLHRSNDQLSLKNAIEKFTINPLKVSQVSDVENLVVLVQIHN
EKKLPLCEVEPALENGVPAVRHLHKLEYELGQQNSPEVFFRLAEILPALQSLHHLDLEKN
KLGDAEAEQLAAVLSSLSSLKLLNLSQNCIGDAGVRKLAEALPSASSLQSLSLCGNVIGD
GGAESLALVLPRMTSLLDLDVKCNKFTDIGAKKLSAALKDSSSVKSLQMWNECIPYGVFE
HLQIQDCRIKAL
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atggtgcctttccaggaggttctgtctgaggtgagaagagttctgcagggggtgaatgcg
aacctccttccttcgcttctgagtcagcttgtggaggctgagatcttctcggctcagtac
taccagaggttattttccgagaacctgagcggtgtggaggtggatgtggacgacctggcc
aggagactcgctcttcctgtgtgggagaaatgggatgccagtaaagtaatcctctcttca
gtgctcacggagaacaagccagatatccatgaacatgaagacgtcattagtgtggatcag
gtggaaaccatacctgatcggctgctgttggacctcatcatctccacaccacttgaagaa
tttccctttgaagaatttcttgatgagagttactcagaagaggtctgggatgatatccca
gatggatcagaagataaatccacgctggtatgtgaagtttgtgatgagaattcctctgtg
agaaagaggcagaccaggaagcgtcgagtgactgaaagaccgtcaaagcaaacacctcgc
cctaaacgcaataaaaaagcccccccgagcagtgaatttccccctgaagtcaacatggcc
gtgcaggaaggggatttccacgtcgctggtgtgccttcgcttgtacacttccccttaact
atcgccactgctgcctctctaatgccatctggttcaccaacaatgcaaatcatacaaacg
ttcaatcccctctctcctccggtgattaacggcattctgccagtagggcacacctatgtg
ctggtttcaccacagtctatagcgccaatgccagcgccggtaccagtgccacagactgcc
cctctgtcacctgtcggcgggacagtggctcctgtagagctcagtatgtccatacatccc
gtatgctcattatcagacaccgcaagcaggggtcagtctccatcgcagccggatcctgtt
tcacccttacgagacaaatcaccctccaaagattttcattctacaccccagcaaatcaag
aagatgccagtgataccaaagaatgttaaagacttcatccagcacttgaagtcacacata
ggagaagcgtgcagcaggctgcaaggaggaatgagcatggagtctcactacatagacaca
gcactggtgcagaggaagcttataatcaggactggcaagaatgcaaacaaatgcttggag
aaggaacttgttgtgctcagtgactcggagcgaaagaaagccacgatgcacaggagccat
gttttccaaaactgtggaaccaataacaagcacctgatcactgtacttgcgaaagctggc
atgggaaaaagcacatttatccagcgtttggccttggactggtctactggtggccttcgg
cagttccagttcatctttttgttaaattgcaaggttcttaatctaactcaggcaggcttc
agtctaaagagtttgctgtttgactcatccacgtctcctcagtgtgatgattctgatgct
gtcttcaagcacattctcacctttccagaaaaggtccttgtagtttttgacagtttcgat
gatgtgaaagaccttgaaggacttcttcaatccccagctacctcagttacagatggcaac
tacagtattcggcagctattttctggtttgtttcagaaaaagattctgtcagggtgcacc
cttttgatagcaacccgacccaaggacgtcctgaatcagctgctgcgcaaagtggacagt
atcttggagttgtgttgcttttctccaaaggacatagaaacgtacgtctcaaactatttt
gtggatgcatcagagaaagaggaggcactaaagaagcttgaaagccaaaaatacattttc
agtttatgctcgaaccctttgctgtgccatctcacttgctttttgctggagcatctaaaa
aacagtggtgataatttgccatcgactcttacggatttataccagagagtggtcagccag
cttgtagagctaaatgaggaccttcagggatccaaacaggacactgcgcagctgtgtaac
atagcatggggtggatttaaaactcaaacctctcttttaaaccaaaacctgaacaaaacc
ttggtagattatggcctgaactctggaatacttatgacacatacacagtgtgataaacct
gacaagaaccaggtcatttattttgcaaatctttttgtgcagaccctgcttagtgccatg
cttctggttcattccaaagaactgaatgataaaactctgctggctcagatctcactttac
caacggaagaggaaatttcagggagagtggcaggatgtactacagcggtttgtaatggga
ctactttttcagaaaagcaccattcattgttctagggttttccaaagcagtaccgacctc
caggtgaaaaggaaagcagtggaagtccatctggaaaatctgaaaccagcagagatgatt
cccagcaggttacttgaactgtttcactgcgtgtacgaggccagaaacgtcaaattcacc
aaacttctggccaaaaaccttcctgaaaatctgtcattttgtggagctcagctctctcca
gtggatgcctatgttgtttggcatcatctttcgcataccaaaggacttaaacagacgttc
tccattgacttgagggacacgtgtgttcctctcagtgggctcaaagacctggttgcactg
aactgtgtggcctcattccgggcccctacgatggacaccattaacctgtgggaggacttg
catcgcagtaatgatcaactaagtttgaaaaacgccattgaaaagttcactataaaccct
ctgaaggtgtcgcaggtgtctgacgtggagaacctggttgttcttgtacaaatccacaat
gagaagaagctgcccttatgtgaggtcgagccggctctggagaacggcgttcctgccgtg
cggcatcttcacaagctggagtacgagcttggccagcagaacagccctgaagtgtttttc
cggctggcggagatcttacctgcccttcagtcgctccatcacctggatcttgagaagaat
aagttgggcgacgctgaagccgagcagttggccgctgtgctgagctcgctgtcgtctctg
aagctgctgaacctttctcaaaactgtattggagacgccggagtccggaaacttgctgaa
gccctgccgtctgcgtcctcgctgcagagcctcagtctgtgtggaaacgtgatcggggac
ggcggggccgagagcttggcgttggttttaccgcgcatgacgtctctgctggacctggat
gtgaagtgtaacaagtttactgacatcggagccaaaaagctgagcgctgcattaaaggac
tcatccagtgtgaaatctcttcagatgtggaacgagtgcattccttatggggttttcgag
catcttcagattcaagactgcagaataaaagctctctaa
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