Clarias gariepinus (North African catfish): 128545021
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Entry
128545021 CDS
T10780
Symbol
alyref
Name
(RefSeq) THO complex subunit 4
KO
K12881
THO complex subunit 4
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03013
Nucleocytoplasmic transport
cgar03015
mRNA surveillance pathway
cgar03040
Spliceosome
cgar05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128545021 (alyref)
09122 Translation
03013 Nucleocytoplasmic transport
128545021 (alyref)
03015 mRNA surveillance pathway
128545021 (alyref)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
128545021 (alyref)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128545021 (alyref)
03041 Spliceosome [BR:
cgar03041
]
128545021 (alyref)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
128545021 (alyref)
TREX complex
128545021 (alyref)
Spliceosome [BR:
cgar03041
]
Complex C
Other components
EJC/TREX
128545021 (alyref)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
128545021 (alyref)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
F07F6_N
Motif
Other DBs
NCBI-GeneID:
128545021
NCBI-ProteinID:
XP_053371326
LinkDB
All DBs
Position
16
Genome browser
AA seq
276 aa
AA seq
DB search
MGDKLDMSLDEIIKQNKQQRGGAGGRGGRGGRGRGGAGRGAGGAGRLGANAGGSFGGRGG
ASGPMRNRQNLNRGRSRPTPYSRPKQLPDKWQHDLFDNGFSTNSGGGGGGGGGGAGMETG
GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ
YNGVPLDGRPMNIQLVTSQIDAQRRAPMQGLSRGGGINRNKMGGFGGMQRGRGGRGGGGG
LRGRGRGGRGGSNKQQLSAEELDAQLDAYNARMDTS
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgggagacaagctggatatgtcgttggacgagattataaagcagaataaacagcagcgg
ggaggcgcgggtggccgcggtgggagaggcggccgaggccgaggtggcgctggccgcggt
gcaggaggagccgggcggctaggggctaacgcaggcggaagctttggaggccgcggcgga
gcctcaggccccatgaggaatcgtcagaacctgaaccggggcagaagcagacccacgccg
tacagcaggcccaagcagctcccggacaagtggcagcacgacctgttcgacaatggcttt
agcaccaattctggaggtggtggtggcggcggtggtggaggagcaggcatggaaaccgga
gggaagctgcttgtatccaatcttgactttggggtctctgatgcagacattcaggaactt
tttgcagagtttggcaccttgaaaaaggccgcagttcattatgaccggtccgggcgcagt
cttggcacagcagatgttcattttgaaaggaaagcagatgcattgaaagccatgaagcag
tacaatggtgttccccttgatggtcgtccaatgaacattcagctagtcacgtcacagatt
gatgcacagagacgagctccaatgcagggtctgagtcgtggtggaggtataaacaggaac
aaaatgggaggctttggaggcatgcagagaggacgaggaggtcggggaggaggaggaggg
ctcagaggccgtggtaggggaggaagaggcggcagcaacaaacagcagctctcggcagaa
gaattagatgcccagctagatgcctacaatgccaggatggacactagctaa
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