Clarias gariepinus (North African catfish): 128545029
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Entry
128545029 CDS
T10780
Symbol
grin2ca
Name
(RefSeq) glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04020
Calcium signaling pathway
cgar04080
Neuroactive ligand-receptor interaction
cgar04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
128545029 (grin2ca)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
128545029 (grin2ca)
04082 Neuroactive ligand signaling
128545029 (grin2ca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cgar04040
]
128545029 (grin2ca)
Ion channels [BR:
cgar04040
]
Ligand-gated channels
Glutamate (ionotropic)
128545029 (grin2ca)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
ANF_receptor
NMDAR2_C
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
128545029
NCBI-ProteinID:
XP_053371333
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All DBs
Position
16:15796288..15863223
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AA seq
1418 aa
AA seq
DB search
MGVRLGLLSDALWPPLLLLLLLCAWHCCWGRPFTMPDPTVNVAVVFSGSAYQVEIKGRLS
RENFLDLPLEVNPITVLVNDSNPRALLTRICDALAANRVHGVVFEDNIGSEAVAQILDFI
STQTSVPIVGISGGSAVVLPYKDDGSNFLQLGASIEQQINGMFKVMEEYNWDSFAVVTSQ
YPGYENFVDYIRSFTDTSYFLWELQNVLTFDMSADSVNDLRAQRLLQQVDAQVLLVYCSY
EEAQYLFTMAREVGLVGPGYIWIVPSLAVGNPNLPPPDSFPVGLISIITDRWKMSLRNRV
RDGVAIIVKAVESFRKQRGFIPDGHADCQSSRVKPENNDTLFRHMLNVSWDHTDFSFNND
GYLVNPSMLIITLDRDRQWDKVGNYESGILQMRYPVWPRYGTYLEPVSDNRHLTVATLEE
RPFVIVEAVDPITGTCLSNTVPCRRQSNKTEVIIGDTEPYTKLCCKGFCIDILKKLSRNI
KFSYDLYLVTNGKHGKLVRGVWNGMIGEVVYKRADMAIGSLTINEERSEIIDFSVPFVET
GISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVTVFVFEYFSPVGYNRSLVTA
KDPGGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAVIFLASYTANLAA
FMIQEQYIDTVSGLSDKKFQKPQEQYPPFRFGTVPNGSTERNIRSNYPEMHAHMVKYNQK
GVEDALNSLKTGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKESRW
KRPIDLALLQFLADGDTQKLQTVWLTGICRNEKKEVMSSKLDIDNMAGVFYMLLVAMGLS
LLVFAWEHLLYWKLRHSVRKSERLDFLLAISRGIYSCFNGVEDADHDGSIQSPDVTSSYT
QANMLKMLKTAKDIVSSARVENSLDNATKTIENWSRRAPEAAKPSLPTHLISTEASHGRL
PYISSVTNNHIPYTQRALTSSFPLHYGDSATLLEKPRVVTRPTPLRYTLPARTSHHHIYE
RTLPISSLSSPHIAMKDPPPPTAPKPHHSARLFMDSQGCHPMASSFHPYREFHVPDIYLE
HQQPPESRKLYTGGQGRKKRSHSYVAPSQEPRRRNDYDEPTSCLAELRANQLLENHAHPS
PCMGSHYQRPSGSCNSCMKPYLEPDMDDVPLLGKEKLNRRASFLRATWGGDRMRHLDEKP
STSATSSSRINMPDLFPRVVVANPKPSKMYARSSNNFCYSMPAEPAYLDPAHMGSYPYKP
QKLKYSHSTHLPSYREAILQNAAALRRSSSTVVHRHYSTYLNSYTDLPVYMGPLAQGPAH
FYDHSKDMCHLFPCINHCTNDAALVTQIGGRPVMYDNTAFGGYEGVGCSREEPPLQPLHS
LPASSKNRDRRQALAARRLNSPYVPKPWGRVSSLESEV
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttcgtttaggcctcctgagcgatgctctgtggccgccactgctgttgttgctg
ttactctgtgcctggcattgctgctggggcaggccattcacgatgcctgatccaactgtg
aatgtagcggtggtgttcagtgggtctgcctaccaggtggagattaaagggcgcctgagc
cgggagaactttctggacctgcctctggaagtgaaccccatcacagtgctggtaaatgac
agcaatcctcgggcacttctgacacgcatatgtgacgcactggctgctaatcgcgttcat
ggcgtggtcttcgaggacaacattggctctgaggctgtggcgcagatcctggacttcatc
tcgacgcagacgtctgtgcctattgtaggaatcagtgggggatctgctgtcgtcctgccg
tacaaggatgatggctccaacttcctgcagctgggtgcttccattgagcagcagatcaat
ggcatgtttaaagtgatggaggagtacaactgggacagttttgcagtggtgaccagccag
taccctggttatgagaactttgtggattacatccgctccttcacagacacctcctatttt
ctgtgggagctacagaatgtactgacgtttgatatgtcagctgatagcgtgaatgacctg
cgcgcacaacgtctcctacagcaggtcgatgctcaggttctgttggtctactgctcatat
gaagaggcacagtatctgttcaccatggcaagagaagtgggcctggttggacctggctac
atttggattgtccccagcctggcagtgggtaaccccaacctgccaccacctgacagcttc
ccggttggcctaatcagcatcatcacagaccggtggaagatgagtctaaggaacagggtg
agggacggtgtagccatcatagtgaaagcggtggagagtttccgtaagcagagaggcttt
atacctgatggacatgctgactgccagtccagtcgagtgaagccagagaacaatgacacg
ctcttcaggcacatgttgaatgtgtcgtgggatcacacagatttctcattcaacaatgat
gggtacctcgtcaacccttccatgctcatcatcactctggacagagacaggcaatgggac
aaggtgggaaattacgagtctggtatactacagatgcgctatcctgtctggcctcggtat
ggaacgtacttggagccagtgtctgacaaccgccatctaacagtagccactcttgaagag
aggccatttgtaatagtggaggctgtggaccccatcactgggacctgcctcagcaacact
gtgccctgcagacgccagtcaaacaagacagaagtgatcattggagatactgagccctac
accaaactgtgctgtaaaggcttttgcatagacattctaaagaagctttcccgtaatatc
aagttttcctatgacctctatctggtcaccaatggtaaacatggcaagctcgttcgaggt
gtttggaacggcatgattggagaggtggtctacaagagggcagacatggccattgggtct
ctcactataaacgaggagcgttctgagatcattgacttctccgtgccattcgtagagaca
gggatcagtgtgatggttgccaggagcaatggaactgtgtctccatcagcatttttggag
ccctacagccctgcagtgtgggtgatgatgtttgtgatgtgcctgacagtggtggctgtg
actgtgtttgtgtttgagtacttcagccctgtagggtacaaccgtagcctggtcactgca
aaagatcctggcggaccaacctttaccattggaaagtcagtgtggctgctttgggggatt
gtgttcaacaattctgtgccgatcgaaaacccaaaaggtaccacgagtaagatcatggtc
ctggtatgggccttctttgctgttatcttcctggccagttacacagccaacctcgcagca
ttcatgatccaggagcagtacattgacactgtttctggactgagcgacaaaaagttccag
aagccgcaggagcagtatccaccgtttcgctttggtacagtgcctaatggaagcacagag
cggaatataaggagcaactatcctgagatgcacgcccacatggtcaagtacaaccagaag
ggtgtggaagatgcactaaacagcctcaaaactggcaaacttgatgcctttatttatgat
gcggccgtactgaactatatggctggtaaagatgagggctgtaaacttgtgaccattggg
agtgggaaggtttttgcaactacaggctatggcatcgccttacagaaggagtcccgctgg
aaacggcccattgaccttgctctcctccagttccttgctgatggtgatactcagaagctg
cagacagtgtggctgactggaatttgtcgcaatgagaagaaagaagtgatgagctccaag
ctggacattgacaacatggctggtgtattctacatgttgctggtggccatgggcctcagt
ctgctggtgtttgcttgggagcacctgctttactggaaactacgccactctgtgcgcaag
tctgaacgcctcgacttcctactagcaatcagcaggggtatctacagctgctttaatggt
gttgaggatgcagaccatgatggaagtatacagagcccagatgtcactagcagttacacc
caggccaatatgctgaaaatgcttaagacagccaaggatattgtatcctctgccagggtg
gagaactccttggacaatgccactaaaacaattgagaactggagtcgcagagctccagaa
gctgcaaaacctagccttccgacccatctgattagcaccgaagccagtcatggccgtttg
ccctacatttccagtgtcaccaacaaccatataccttacacccagagggcactgacttcc
tcgttccccctgcattatggtgacagtgccaccttgctagagaaacctcgggtagtgaca
aggccaaccccattacgctacactcttcctgcacgaacaagtcaccatcatatatatgaa
cgaactctacctatttctagtctaagcagtccccatattgctatgaaggaccctccacct
cccacagccccaaagcctcaccatagcgccaggcttttcatggacagtcagggctgccat
ccaatggcctcctcctttcacccttaccgtgagtttcatgtacctgacatctatttagaa
caccaacaacctcctgagagccggaaactgtacactgggggacaaggccgcaagaagagg
tcccacagctatgtggcaccatcacaagaacctcggcgcaggaatgactatgatgaacca
acctcttgcctggctgaacttagagctaaccagctcctggaaaaccatgcccatccttca
ccctgcatgggaagccactaccaaaggcccagtgggagctgcaattcttgcatgaaacca
tacctggagccagacatggatgatgtccctctgttgggaaaggagaaactgaaccgtcgc
gcctctttcctcagggccacatgggggggtgacaggatgcgacatctagatgagaagcct
tccacctctgcaacttcttccagtcgcattaacatgcctgacctcttccctcgtgtagtg
gtagctaatcccaagccttcaaagatgtatgcccgttctagtaacaacttttgctacagt
atgccagctgagccagcttatcttgacccagctcacatgggctcctacccctacaagcca
cagaaactcaaatactctcattctacccaccttccctcataccgtgaggcaattctgcag
aatgccgcagctctgaggcggtcttcttccacagtggtgcacagacattactccacttac
ctgaactcatatactgacttgccagtatacatgggcccactagcacaggggcctgcacat
ttctatgatcattccaaagacatgtgtcacctgttcccctgtatcaaccactgcacaaac
gatgctgccctggttacccagataggtggtaggcctgtgatgtatgacaacactgctttt
ggaggctatgagggtgttggatgctcacgtgaagaaccacctctgcaaccactgcacagt
ttaccagcctcatctaagaacagggaccgcagacaggctttggcggcacggaggcttaat
agtccctatgtcccaaagccatggggcagagtgtctagtctggagtctgaagtctaa
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