Clarias gariepinus (North African catfish): 128545086
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Entry
128545086 CDS
T10780
Symbol
smarce1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1
KO
K11651
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03082
ATP-dependent chromatin remodeling
Brite
Transcription machinery [BR:
cgar03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128545086 (smarce1)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
128545086 (smarce1)
PBAF complex
128545086 (smarce1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
GCN5L1
Sarcoglycan_2
Motif
Other DBs
NCBI-GeneID:
128545086
NCBI-ProteinID:
XP_053371409
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All DBs
Position
16:complement(23371375..23377951)
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AA seq
428 aa
AA seq
DB search
MSKRPSYAPPPAPAPTTQMPTTPGFVGYNPYSHLAYNNYRLGGNPGGNNRVMNSSGITVP
KPPKPPDKPLMPYMRYSRKVSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQDYL
NEYEAEKIEYNDSLKAYHNSPAYLAYVNAKNRAEAALEEESRQRQSRLDKGEPYMSIQPA
EDPDDYDDGFSVKHTAAARFHRNHRLISDILSEVVVPDVRSVVTTARMQVLKRQVQSLMV
HQRKLEAELLQIEDRHQEKKRRFLESTDSFNNELKRLCSLKVEVDMEKLAAEMAAAEEAA
RRRAEEREREREKEREREKERETEAEKTERATEEDQPGASEPNSSEQNTSTDSKEQDKPS
PMETDEARADVSEGQQECEERTVEKPEQAESGLEEGASDSNPPLERENSTESAPSDSAPE
ERAPAPPQ
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagcggccgtcttacgccccgccccctgctccagcccccactacacaaatgccc
accacccctgggtttgtggggtacaacccatacagccatctggcctacaacaactacagg
ctgggaggaaaccccggcggaaacaacagggtaatgaactcctcagggattacggttccc
aagccgccaaaaccccccgataagcctctgatgccctacatgcggtacagccggaaggta
agcaggaaggtttgggaccaggttaaagcctctaaccctgatttgaagctatgggagatt
gggaagatcatcgggggcatgtggagggacctcactgatgaggaaaaacaagattactta
aatgagtacgaagctgagaagatcgaatataacgactccctgaaggcataccacaactcc
ccggcgtacctagcatacgtaaatgctaagaatcgcgccgaagcggctctggaggaggag
agcaggcagagacagtctcgtctggacaaaggagagccttacatgagcatccagccggct
gaagatcctgatgattatgatgacgggttctctgttaagcacactgcagcagctcgattc
cacaggaaccaccgtctgatcagcgatatcctgagtgaagtggtggtgcctgacgtgcgt
tcggtggtcactacggctcgcatgcaagtgctcaagcgccaggttcagtccctcatggtg
caccagagaaaactggaggcggagctgctgcagattgaggacaggcatcaggagaagaaa
aggcggttcctcgagtctacagattccttcaacaacgagctcaaacggctgtgcagcctg
aaggtggaggtggacatggaaaagcttgcagcggagatggcggctgcggaagaagctgcc
aggcggagggcggaggagagggaacgggagagggagaaggaaagggagcgagagaaagag
cgagaaactgaggcagagaagacggagagagcgacagaggaggatcagccgggtgcaagc
gaaccaaacagcagtgagcagaacaccagcactgacagcaaggagcaggacaaacctagt
ccgatggagacggacgaggctcgggctgacgtgtctgagggccagcaggagtgtgaggag
cgcacagttgaaaagccagagcaagcagagagcgggttagaggagggcgcaagcgacagc
aatcctccactagagagggaaaacagcacagagtctgcaccctctgactccgccccagag
gagagagcccctgcccccccacagtaa
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