Clarias gariepinus (North African catfish): 128545103
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Entry
128545103 CDS
T10780
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04010
MAPK signaling pathway
cgar04210
Apoptosis
cgar04218
Cellular senescence
cgar04620
Toll-like receptor signaling pathway
cgar04621
NOD-like receptor signaling pathway
cgar04622
RIG-I-like receptor signaling pathway
cgar04623
Cytosolic DNA-sensing pathway
cgar04625
C-type lectin receptor signaling pathway
cgar04920
Adipocytokine signaling pathway
cgar05132
Salmonella infection
cgar05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
128545103 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
128545103 (nfkb1)
04218 Cellular senescence
128545103 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
128545103 (nfkb1)
04621 NOD-like receptor signaling pathway
128545103 (nfkb1)
04622 RIG-I-like receptor signaling pathway
128545103 (nfkb1)
04623 Cytosolic DNA-sensing pathway
128545103 (nfkb1)
04625 C-type lectin receptor signaling pathway
128545103 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
128545103 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
128545103 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
128545103 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgar03000
]
128545103 (nfkb1)
Transcription factors [BR:
cgar03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
128545103 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
Ank_2
RHD_dimer
Ank
Ank_4
Ank_3
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
128545103
NCBI-ProteinID:
XP_053371440
LinkDB
All DBs
Position
16:complement(29080208..29108606)
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AA seq
931 aa
AA seq
DB search
MTDEDAFLPVQEYFDFDPAWIPMDPGFAAVSHPNTHRIEGPCLQITEQPKQRGFRFRYGC
EGPSHGGLPGACSEKNRKTYPQVKICHYHGPARIVVQLVTNTKQPHLHAHSLVGKQCDKG
ICIADLQPKDSSISFPNLGILHVTKKNVSKTLEERMSEAYRLGYNYGVVIHQEIDSFQGE
TRLPRELTDHQRNLICNAAANQAKDMDLSVVRLMFTAFLPDSEGGFTRRLEPVISEPIYD
SKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEDDETGIVWEAFGDFS
PTDVHRQFAIVFKTPKYRDQNLQKPISVFVQLKRKSDSETSEPKPFTYHPQIIDKEEVQR
KRQKTLPNFPDYGGSGVGGMYRGPGGGPTSGGSHTGGSSGGGTGGGHYYQGYYNNFNSGY
GFPPSMGGGGSGVKHCNHGPVEDTDEESDNDLDDDPGTGGVCYRPEFLVSDGRSEESKDL
DKSGVCDSGNADCVFEPRLVELAHRHASALFNFAVSGDLRRLLVPQRPLMAAQDENGDTG
LHLSVIHSQTDAVKNLAEVMAAIPGEDVVNMRNDLYQTPLHLAVLTEQKEAAQALMEAGS
DLALTDRHGNTALHLAAQQKDGEMMRVLLKHQAALELSSMHNTAGLCPLHIAILTNSLSS
VRALLEAGANVEVQERTCGRTPLHLATELDNVSLAGCLLLEGDAEVDSLTYNGSTALHIA
AGRGSLKLSALLIAAGADPHKENFEPLFFRDEECCREDRDDVDEGYIPGTTPLDMAASSE
VREILKGKPYQPSTVVIPPQGDMQSLGAETKQALCKCLEESPGGWESLAHTLRLGILTNA
FRLSPRPACTLLDSYEVSGGTVCELLAGLKSIGNSGAVSILQERMACEENDDAHDGHLTT
DGGVSAGLHVLKLSPSDDIGVCDSGVETSFQ
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgacagatgaggacgcgtttcttccggtgcaggagtactttgactttgatccagcatgg
attccgatggacccgggttttgctgctgtgtcacacccaaacacacatcgtatagaagga
ccttgtctccaaattacagaacaacccaagcagcggggcttcaggtttcgttacggctgc
gagggcccgtctcacggcggactaccaggagcctgtagcgagaagaacaggaagacgtac
cctcaggttaagatctgtcattatcatggtccagcacgcatcgtggtccagctggtgacc
aacaccaaacagccgcatctgcacgcgcacagcctcgtgggtaaacaatgcgacaagggc
atctgcatagccgaccttcaacccaaagactcctccatcagtttccctaacctgggtatc
cttcatgtgactaaaaagaacgtgagtaaaactctggaggagaggatgagtgaagcgtac
aggctaggttacaactacggcgtggtaatccatcaggaaatcgactccttccaaggagaa
acacgccttcccagagagctcacagatcatcaaagaaatctgatctgcaatgccgcagct
aaccaggccaaagacatggacttgagtgttgtaaggctcatgttcactgcctttctgccg
gacagcgagggcggcttcacccgcagactcgaacctgtcatatccgagcccatctacgac
agcaaagccccgaacgcttcgaacctgaagatcgtgcggatggatcgcactgcagggtgt
gtgacgggcggggaagaagtctacctgctctgtgacaaagttcagaaagatgacatccag
gtgcgcttttatgaagatgacgagacgggaatcgtctgggaggcattcggggatttctct
cccaccgacgtgcacagacagttcgccatcgtcttcaagacgccgaagtaccgcgaccag
aacctccagaagcccatctcggtgttcgtgcagctcaagaggaagtcagacagtgagacg
agcgagcccaaacccttcacttatcacccacagatcatagataaggaagaagtgcagagg
aagagacagaagacactgcccaatttcccggattacggcgggagtggtgtagggggcatg
tataggggaccaggaggtgggcctacatcagggggcagccacactggaggaagtagtgga
ggagggacaggtggaggtcattattaccagggttattataacaacttcaactccggctac
ggctttccgccatccatgggtggaggaggaagcggcgttaaacactgcaatcacggtcca
gtggaagacacagacgaagagagcgacaacgatctggacgacgatccggggaccggagga
gtgtgttaccggcctgaattcctggtgtccgacgggaggagtgaagagagtaaggatctg
gacaagtctggagtgtgtgactcaggcaatgcagattgtgtgtttgagccgcggttagtc
gagctagcacataggcacgccagcgctttgttcaactttgccgtaagtggtgaccttcgc
aggctgctggttccacaacgccctctgatggctgcacaggacgaaaacggagacactggg
ctgcacctgagcgtgatccacagtcagacggatgcagtgaagaacctagcagaggtgatg
gcggcgatccccggggaggacgtggtgaacatgaggaatgatctgtatcagactccactg
cacctggctgtattgaccgaacagaaggaagcagcccaggcgttaatggaggcgggaagt
gacctcgctctgactgatcgccatggcaacacggcactccacttggccgcccagcagaag
gacggagagatgatgcgggtgctcctgaaacatcaagcggcgctggagttaagcagcatg
cacaacacagcaggtctgtgtcctcttcatatcgccatcttgactaacagcctgagcagc
gtgagggctcttctggaggcaggggctaacgtggaggttcaggaacgtacatgcggtcga
acgccacttcacctcgctactgagcttgacaacgtctcgctcgccggatgcctcctgcta
gagggtgatgctgaagtggacagtctgacgtataacgggtccacggcgcttcacatcgca
gcaggacggggctctctcaaactgagcgcgctcctcatcgccgcaggcgcagatcctcat
aaagagaatttcgagccgctgttcttcagagacgaggagtgctgcagggaagaccgagac
gatgtggacgagggctacatcccagggacaaccccacttgacatggcagcttcttcggag
gtgagggaaatcctgaaaggtaaaccgtaccagcccagcactgtcgtcatcccaccacaa
ggagacatgcagagtctgggcgcggagacgaagcaggcgctgtgcaaatgtctggaggag
tctccgggtggctgggagagtctggcacacacactcagactgggcatcctcaccaacgcc
ttccgcctcagcccacggccagcgtgcacacttctggacagttacgaggtgtcaggcggg
acagtgtgcgagctcttagcaggtctgaagagtatcggaaacagcggcgccgtgagcatc
ctgcaggagcgcatggcgtgcgaggaaaacgatgacgcacacgacggacatctgaccacc
gacggtggtgtctctgcaggcctgcatgttctaaaattatctccgtcagacgacataggc
gtgtgtgatagcggtgtcgagacatctttccagtag
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