Clarias gariepinus (North African catfish): 128545391
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Entry
128545391 CDS
T10780
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cgar03009
]
128545391 (ddx55)
Enzymes [BR:
cgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128545391 (ddx55)
Ribosome biogenesis [BR:
cgar03009
]
Eukaryotic type
Pre-60S particles
Helicases
128545391 (ddx55)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
CTT_SPB4
ResIII
SBF_like
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
128545391
NCBI-ProteinID:
XP_053371591
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All DBs
Position
17:9244400..9251295
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AA seq
602 aa
AA seq
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MESIGDGKWDSLPVKLHHDILLTLKKLGFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKT
LAFVIPLLEILLKREETLKKMQVGALIITPTRELAIQISEVVGQFLEEFPQFRQILLIGG
SNPIEDVEKFKANGANIVIGTPGRLEDMFRRKADGLDLASCVKALDVLVLDEADRLLDMG
FEASLNAILGYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAATSVQKTPA
RLSNYYMLCRTEDKFNTLVAFLRQHKHEKQLVFFSTCACVEYFGRALEVFVKNVPILCIH
GKMKDKRNKIFSEFRELKSGILVCTDVMARGIDIPDVNWVLQYDPPSSASSFVHRCGRTA
RIGNRGSALVFLLPMEESYVSFLSINQKCPLQSFPPVKDVMDVLPKLKALALRDRAVFER
GMKAFVSFVQAYAKHECSLIFRIKDLDFGALARGFALLRMPKMPELRGKTFSNFEEITDT
DSIRFKDKNREKQRQKSLQEQKEREMQMPFRKKNFIKNKAWSKQKSKKDKKKKIAAKRKM
NEGSDVDDEDIDELLSDTRLLKKLKKGKITEEDFDKQINAGKNPKHKRAGPSHEDGAEGD
SE
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggagagtataggcgatggaaaatgggacagtttaccagtaaaacttcaccacgacata
ctgctgactctgaagaagctcgggtttacttatatgactccggttcagtcagcatgcatc
cctctttttatgagcaataaagatgtcgcagccgaggcggttacaggcagtggcaagact
cttgcttttgtcattcctctgctggaaatcctcttgaaacgtgaggaaacgttgaagaaa
atgcaagttggcgctttgattatcacaccgacccgggagctggcgatccagatcagtgaa
gttgtgggtcagtttcttgaggaatttccccagttcaggcagattctgttaattggtgga
agcaaccccattgaagatgtagaaaagttcaaagctaatggggcaaacatcgtgatcgga
actcctgggcgtctggaggacatgttcagaagaaaagccgacggcctcgacttggccagc
tgtgtgaaggctttggacgtgcttgttctagacgaagccgacagattgctcgacatgggc
tttgaagcaagcttgaacgctattttgggctatctacccaagcagagacgcacaggtctt
ttctctgcaacgcagactcaggagctagaaaagctggtgagggctggcctccgaaacccg
gtccgtatcaccgtgaaggagaaaggagtggcggccactagcgtgcaaaagactccggcg
aggcttagtaattactacatgctctgtagaacagaagacaagtttaatacactggtagct
ttcctgagacaacacaaacacgagaagcagctcgtcttctttagtacatgtgcctgtgtg
gagtatttcggcagagcactagaggtgttcgtaaaaaatgtccctattctttgtatccac
ggcaagatgaaggacaaacggaacaagatcttctctgagtttcgggaattaaagagtggg
attcttgtgtgcaccgatgtgatggcgagaggcatcgacatccctgatgtgaactgggtg
ttgcagtatgatcctccaagcagcgcgagttcttttgtgcatcgatgtggccgaactgct
cgtatcgggaaccgaggcagcgctcttgtctttctcctgccaatggaggaatcctacgtc
agttttctgtctatcaatcaaaaatgtcctcttcagtcgtttcctcctgttaaagatgta
atggatgtgttgcccaaactgaaggctttggctctacgggacagggccgtatttgagaga
ggaatgaaggcgttcgtctcgtttgtccaggcttacgcaaagcatgagtgtagcctaatt
ttccggatcaaagatctggatttcggcgctttagctcgaggctttgctcttctccggatg
cccaagatgcccgagttgagaggcaagacattctccaacttcgaagaaatcacagacact
gactcgatccgcttcaaggacaagaatcgagaaaaacagagacagaaatctttacaggag
caaaaggagagggaaatgcagatgccgtttcgaaaaaagaactttattaaaaacaaagcc
tggtctaagcagaaatccaagaaggataagaagaagaagatcgctgccaagagaaagatg
aatgagggatcagatgtggacgatgaggacattgacgaacttttgagcgacacgcgtcta
ctaaagaagctcaagaagggaaaaattacagaggaagactttgataagcaaataaatgct
ggaaaaaatccaaagcataaaagagcaggaccatctcatgaggacggagcagaaggagac
agtgaatga
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