Clarias gariepinus (North African catfish): 128545455
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Entry
128545455 CDS
T10780
Name
(RefSeq) chondroitin sulfate proteoglycan 4-like
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cgar00535
]
128545455
04091 Lectins [BR:
cgar04091
]
128545455
Proteoglycans [BR:
cgar00535
]
Cell surface proteoglycans
Others
128545455
Lectins [BR:
cgar04091
]
C-Type lectins
Others
128545455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Cadherin_4
7tm_3
Motif
Other DBs
NCBI-GeneID:
128545455
NCBI-ProteinID:
XP_053371698
LinkDB
All DBs
Position
17:complement(29182977..29200556)
Genome browser
AA seq
2382 aa
AA seq
DB search
MSQCVLSVRSLLEKLLLLLVLIKPPAHGASFYGDGFVQLKTVGSSSKNSLHVRFRTSSAD
GLLFLAAGETDFLWVALQAGRIQVQIELGSGERTLRSEEAAHLNDLTWHSVELQHNDHNI
TLTVDRTVQSRLSIPGPDLELSVQDGFYVGGLENSDKLYLFTDISHVGFRGCLDEVLFNE
HNLLSSLRPYSGYKIVHEVSLGCSPQFSASVNDSISFFSSKAYISLPKWEISQEGVFECE
FYTSGEAGLLLYSSVGKGDYVALEIRHKRLIAVVRVDGSKTVLSSITAVGGDAWHSLRLC
VAPRALQLTIGEEILNSSFGAKSGALHFNRPLFLGGVDAKTFSEVQRNGLLSVTSKHMSG
ASFKGCLRNIRVNDRNMGLLNAIVSKDISVGCEPVKHVQPISTANPQTFQLETPHLDKTN
AQTFLLLKDLEVLEGGRAPLDSEHIKLNLEFHKLGIQQSQIMFRVEEQPVHGELRLDVDP
DQQDNTFNVLDLHHGRVMYVHGGSEDSQDFFMFSVFTTSTNKDVPGYLKASHLHRFNITV
EPINDAPELSLPEGSIFILLENSKRHLSTDMLRATDPDSSYTELVFSILGNLIASAGFLE
LADNPGKPMTSFSYSHLEQGKVSFVHNGIKNSRMAIRVSDGEKVSNTVVLRIIAIALEYK
IINNTGVDVIQGRASLIGSKNLAVQVNVAKQAIDIRYDVLSPPVYGQLQRLHSSGEWKHT
STFTQKLLEKDRLRYLSTFHGPQFKNISDGFKCNISIGSWASDEVLVHIRVQWVHYKVTR
SKMEVNDDHKVTLTPRDLRIVSKNVKLSENDIYIRLLTLPRKGVLLFNDKPLKKNSTFSQ
MNITDQKVQYKLYGNPNKDLRDTFSFQVFSEYSYSGTHDFRISIKAAVHGVVLRNHGLAL
MEGESKIITKDSLFFETFDSRAVSYTIRSSPQHGKIIRSDNSSINIKEFTNQDILEERIL
YVHDDSETARDAFMFCVSASSLKDYHGVFNISIELVNDQKPVRVVDKVFHVARDSQRLLT
LEDLCYHDPDSDYDDRQLLYTRRGISLGDLVLVNDTTHKLYQFHQKDLEEKKVLFVHRGV
SFGRFVLFVFDGKHYASALLEVSAQDPYLKIANNTGLLVQKGQEVILQSVNFSVATNTDV
RSDEDILFEIFHPPSHGILLCEGIEADAFTQYDLKAGHVVYRHDDGRNLMDSFSLTATVN
GLRMDVTVVVKVYLKSHQKPPQVIHNHNVVVEEGKSVTMHKTELEVVHEDNTPDEIVYTV
KTPPSHGFLRRSHVSGENRYDGNVRKFSQWDVNAGHIRYVQEKPGHTGDSFSLDVTNGIV
TVCDLVVFVDIIPFFLPLEVENLTMEEGTSRALTREVIKVTGQHFTKLHVLYHVIEGPYH
GRIEHFWIPGVPILSFTRVQVEHDFIFYVHDGSETTADNFTLVANVTDVHKQSVPRVIHV
NVTPVNDESPVITNNKILMVWVNSVTEITSDELSAADRDSGPDSLEFIITPPSNGHLALK
SAPSRPVLNFTQAHILNRQLVFVHSGAMLGGFHFQVNDGLNFAPRQIFNITAQSRALSLE
RNRELKVFPGSSKVISMENLFIATDDYEDFRENHTIIYTVTSPPKLGRLIRSRDGNSTET
KPISTFTQNMLKSGLVVYEHTKPIAWTARDSFIFTASSPSVSPPPYTFNIHISYDNTSPG
HWSVLFANTGAVVLQGSRIMIDKLKLDASNLLGKLLEEERDSYDIWYRVTTPPQFGIIVI
DERNLTHEKPNFSQSILNNHGIMYVHDGSESTFDSFCFDVWLNFIGKPPQVPHEKDFIVS
ESFNITVMPVNAVPPLLKTKAPSLLVVKGDTVVLSPENLDIKELDSLPEDIHYTVVSKPD
NGFLALEGWLNESTPTFTQADVNEGRVHFVQEGDPTSGVFYFSVTDGFHRPHYKLLNLEV
CGVQIHVLNNTGLTLVQGQTTGILTLQHLAAVTNKKNTTIKYYITTPPSHGRLVIKEDQI
THFDQEELSSRKVSYQMTDLSSSLDSFEFAVVTAESNLTNQVFNITVKPLIHLGKQVWIP
DGIPVKIRKDVLNASELATISASDPIFEIIVPPKYGKVVNVTVNLDGASESIESFTFRDV
EQGRIAVHENLNLPSAHHNTTTSVLHNKTAFKDSFVFLLKAANVQPASGEFVFMVVPYEP
MTGKHVVSAAPVHPTIHPASNRTSNVVLHMNEPAHMHPTIRPLWAPKTRTRNRVHTRGKF
TVFNAPKNTAGRHKDLPRNTPIRVESLPRPASDPLLIILPLLACLFLIVILVVLILVFRH
RQEKRAQPSMIQDPPENYVEDMVSPSHYLGQSERSLTIPSVVVTPLMPRCTRSPVLEAEH
NETFVPAITLPDSPMLVSPWSTMDPEATPQSSPTLRQNQYWV
NT seq
7149 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagtgtgtgctgagtgtcaggagcctgctggagaaactgcttttacttctagtg
ctaataaagccacctgctcatggagcctctttctatggggatggatttgtgcagctgaaa
acagtggggtcgtccagtaaaaactccctgcatgtgagatttaggacctccagcgcagac
gggctgctcttcctggctgccggggaaacagatttcctctgggtggcgctacaggcagga
cgtattcaggtccagattgaactcggctcaggcgaacgcacccttcgctcagaggaagca
gctcacctgaacgaccttacctggcactccgttgagctccagcacaatgaccacaacatc
accctgactgtagacagaactgtacagagcagactgagcatccccgggcccgacctggag
ctcagcgttcaggacggattttatgtcggcggacttgagaattcggataagctctatctt
ttcactgatatatctcacgtgggctttcgtggctgcctggatgaagtgctgtttaatgaa
cacaatctgctttcatccttaaggccttactctggatataaaattgtccatgaggtgtct
ttgggctgcagcccacagttttcagcctctgtgaatgactcgatcagtttcttcagttcc
aaagcatacatatctctgccgaagtgggagatctcacaggaaggtgtgtttgagtgtgag
ttctatacctcaggtgaagctgggcttctcttgtacagctctgtggggaaaggggattac
gtggctttggagattcgacacaagcgcctcattgctgttgttagagtagatgggagtaag
acagttttaagctctataacagctgtcggtggagacgcttggcattcactgaggctctgt
gtagcacctagggctcttcagttaaccattggtgaagagatcttgaattccagtttcgga
gccaaatctggagctctccattttaacaggcccctcttcctgggtggggtggatgcaaag
acattttcagaagtgcagagaaatggtttgctctctgtcacgtcgaagcacatgagtggt
gcctcctttaaaggctgtcttagaaatattagagtcaatgatcgaaacatgggcctgctc
aacgctattgtgtccaaagacatttctgttggatgtgagcctgtaaaacatgtccaaccc
atctccacagccaatccacagacttttcaactggagactcctcatttagacaagacaaac
gctcagaccttcttgcttcttaaagatctggaggttcttgaaggtggccgagcaccactt
gattcagagcacattaaattgaacctggaattccacaagcttgggatccagcaatcccag
atcatgttccgcgttgaggagcagccggtccatggagagctgagacttgatgttgatcct
gatcaacaggataatactttcaacgttctggatttacatcatggtcgggtcatgtatgtt
cacgggggatcagaggattctcaggacttcttcatgttttcagttttcaccaccagcacc
aataaagatgttcctggttatttgaaagcaagccacttgcacaggtttaacatcacggta
gagcctattaatgatgccccagagctcagcctcccggagggaagtatttttattctccta
gagaactcaaaacgacatctgagcacagacatgttgagagctactgaccccgatagtagt
tacacagaactggtattctctatactcggtaacttaattgcaagcgctggattcctggaa
cttgctgataatccaggaaaacccatgacctcgttctcctactcgcacttggaacagggt
aaggtgagtttcgtccacaatggcattaagaactctaggatggccataagagtgagcgat
ggagaaaaagtgagtaatacggttgtgctgagaattatcgccatcgccttggagtataaa
attataaataacaccggtgtggacgtgatccagggtcgagcttctctcattggtagcaaa
aatttagctgtgcaagtaaacgtagccaagcaagcgatcgatatccggtacgatgttcta
agcccgcctgtctacggtcagctgcaacgactacattccagtggtgagtggaagcatact
agtacctttacgcagaaacttctagaaaaggatcgactcaggtatcttagcaccttccat
ggtccacaatttaaaaatatatccgatggcttcaaatgcaacatcagcattggctcttgg
gcttcagatgaagttctcgttcatataagggtccagtgggttcattataaagtcacaaga
agtaaaatggaggtgaacgatgatcataaagtcacattgacacctcgggatttaagaata
gtctccaaaaatgtgaaattgtctgagaatgatatttacatccgtttgttgactttacca
aggaaaggcgtcttgttattcaatgacaagcccctaaaaaagaactctactttcagccaa
atgaacatcactgatcaaaaagtgcagtataaactttatggaaacccaaacaaagacttg
agggacacattcagctttcaggtgttttcggaatactcctattctgggacgcatgacttc
aggatcagtatcaaagccgctgttcacggcgtagttttgagaaatcacggccttgccctc
atggaaggggagagtaagatcatcaccaaggacagtcttttctttgagacgtttgactcc
agggccgtaagttacaccatcaggagcagccctcaacacgggaaaataatccgaagtgac
aactccagcatcaacatcaaggagtttacaaatcaggacattctagaggagcgcatcttg
tatgttcatgatgatagtgaaacagcacgcgatgcgttcatgttctgcgtttcggcgtca
tctctgaaagactatcatggcgtttttaacatctctatcgagctagtgaatgaccaaaaa
cctgttcgagttgtagataaagtctttcacgttgcacgggacagtcagaggctcctgacg
ttggaggatctgtgttaccatgaccctgattcagactacgatgacaggcagctgctttac
accagacgaggaatctcactgggcgatctcgtcttggtaaatgataccacgcacaagctt
tatcagttccatcaaaaagatctggaggaaaagaaagtgctgtttgtccacagaggtgtc
agctttgggcgctttgtcctttttgtgtttgacggtaagcattatgcatccgcgctgctg
gaagtaagcgcacaggatccctatttaaagatagcaaacaacactggtctactggtgcaa
aagggacaggaagtcattttacaatcagtcaacttcagcgtcgctaccaacactgatgtc
agaagtgacgaggatatactttttgagatatttcatcctccgagtcatggcattctactt
tgcgaaggcatcgaggctgatgcttttactcagtatgacttgaaggcgggtcatgtcgtc
tatcgccatgacgatggtagaaacctcatggactcctttagccttacggctacggtaaac
gggctacgcatggacgtgaccgtggtggtgaaggtgtatctcaagagccatcagaaacct
ccacaagtcatccacaaccacaacgtagtggtggaggaaggaaaatctgttacgatgcac
aaaactgaacttgaggtagttcatgaggataacacaccagacgagatcgtgtacaccgtg
aaaacaccaccgtcacacggcttcctgaggcgttctcacgtatccggggagaaccgttac
gatggaaacgttaggaagttctcgcagtgggacgttaatgctggtcacatccggtacgtc
caggagaaacccggacacaccggcgactctttctcactggacgtcactaacgggattgta
acagtctgtgacctggtggtgtttgtggacatcattccttttttccttccactcgaggtg
gaaaatttaaccatggaagagggaacttcaagagctctaactcgagaagtcatcaaggtc
acgggtcaacattttacaaaacttcatgtcctgtaccatgtgatcgaaggtccatatcat
ggccgtatcgagcacttctggatccccggggtcccgatcctgtctttcaccagggtgcag
gttgaacacgacttcatattttatgtccacgatggcagcgagacgacagctgacaatttc
acactggttgcgaatgtcacagacgtccataagcagagcgtgcctcgggttattcatgtg
aacgtcacacctgtgaacgacgagtctccggttataaccaacaacaagatcctgatggta
tgggtgaactctgtgactgaaatcactagcgatgagctcagtgctgccgaccgtgactct
ggccctgacagcctggagtttatcattactccccccagcaacggacaccttgccctgaag
agcgccccctccagaccggtcctgaacttcacccaggctcacatcctcaaccgtcagcta
gtgtttgtacacagcggtgccatgctgggtggatttcatttccaagtgaatgacggactt
aattttgcccccaggcaaatttttaatatcactgcccaatctcgggcgctcagcctggag
agaaaccgtgagctcaaagtgtttccaggttcctcaaaagtcatttccatggaaaatttg
tttattgccactgatgactatgaagattttcgtgagaatcataccatcatctacaccgtt
acctctcccccaaaactgggccggctgatcagatcccgagatggcaattccactgagaca
aagccaatatctacgtttactcaaaacatgttaaagtccggtttggtcgtatatgaacac
actaagccaatagcgtggacagcaagagactccttcatctttacagcatcttctccttca
gtttcccccccaccttacacttttaatatccacatctcctacgataacacaagtccaggg
cactggagcgtcttattcgccaacacaggtgcagtggtacttcaaggcagtcggattatg
attgacaagttgaagctggatgcctcaaatcttttgggaaagctacttgaagaagagcga
gactcctatgatatctggtacagagtcaccacaccgccacaattcgggataattgtcata
gatgaacgcaacctgacccatgagaaacccaacttctcgcagtccatcctgaacaatcat
ggcataatgtatgtgcacgatggctccgagagcacctttgacagtttttgctttgatgtg
tggttaaattttataggaaaaccccctcaggttcctcatgaaaaagactttatagtctca
gagtcttttaatatcactgtaatgcccgtaaatgctgtgcctcccttactgaaaactaaa
gcccccagtctcttggtggtaaaaggagacactgtagtcttaagtcctgaaaaccttgat
ataaaagaactggacagtttacccgaggacatccactacactgtagttagcaagcctgac
aatggtttcctggccctggaaggttggctaaatgaatctactcctacgtttacccaggct
gatgtgaacgagggaagggtgcactttgttcaagaaggagatcccacctcaggagtgttc
tacttcagtgtaactgatggcttccatcgtccacactacaagctcttaaatcttgaagtt
tgtggtgtccaaattcatgttttgaataatactggattgactctagtacaagggcagact
acaggcatcctgacacttcagcacttggctgcggtgaccaacaagaaaaacacaaccata
aagtattacatcacaacaccaccaagtcacggcaggctcgtcattaaggaagaccagatc
acacacttcgaccaggaagaactttcatcgaggaaggtttcgtatcaaatgacggacttg
tcctcatctctagatagctttgagttcgctgttgtcaccgccgagagcaacctcaccaat
caagttttcaatatcacagtaaagccactgatccaccttggaaaacaagtctggattcct
gatggtattccagttaagataaggaaggatgttttaaatgccagtgagctggcaaccatc
agcgccagcgatccgatctttgaaatcattgttcctccaaaatatggcaaggtagtaaat
gtaacagtgaacttagatggtgcatcagagtctatagaatcctttacctttagggatgtt
gagcaaggcagaattgctgttcacgagaaccttaacttgccatctgcacatcataacaca
actacttctgttctgcataacaaaactgcatttaaagattcgtttgtgtttcttttaaaa
gctgccaacgttcagcccgccagtggagagtttgtttttatggttgtaccgtatgagcca
atgacaggaaaacatgttgtttcagcagcaccagtgcatccaaccatacatcctgcttct
aatagaacaagcaatgttgttttacacatgaacgaaccggcacacatgcaccccaccata
agaccactctgggcaccaaagaccaggacacgaaaccgtgtccacacacgaggaaaattc
acagtttttaatgcacccaagaacacagcaggcagacacaaagatcttcccaggaacact
ccaattagggtggaatctttgccaagacctgcctctgatcctcttcttattattctaccc
ttgctggcctgtctgtttcttatcgtcatcctagttgttttaatcctggttttcaggcat
aggcaagagaaaagggctcagccttccatgatacaagaccctccagagaactatgtggag
gacatggtgtctccaagccattatttgggacagtctgagagaagtctaaccattccatca
gttgttgtgaccccactgatgccaaggtgtactagaagtcctgttttagaggcagagcac
aatgagacttttgtaccagcaataacacttcctgactctccaatgcttgtctctccatgg
agtaccatggatcctgaagcaacaccacagtcttctccaactttgagacaaaatcagtac
tgggtttaa
DBGET
integrated database retrieval system
