Entry |
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Symbol |
abca1b
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Name |
(RefSeq) phospholipid-transporting ATPase ABCA1b
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KO |
K05641 | ATP-binding cassette, subfamily A (ABC1), member 1 |
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Organism |
cgar Clarias gariepinus (North African catfish)
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:cgar00001]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
128545603 (abca1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
128545603 (abca1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:cgar02000]
128545603 (abca1b)
Transporters [BR:cgar02000]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
128545603 (abca1b)
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
2:18041566..18074788
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AA seq |
2284 aa
MSVSTQLGLLLWKNFTYRKRQTFQLLIEIVWPLFIFFILIAVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGIVCNANNPCFRHPTPGESPGVVGNFNDSIISRLFSDAKKILLYSQNDK
SLDGFKELINAVKDMQNSSSGFKLKDFLNDNETLSTFLLQNASITDNVVQEILMAEVNLE
KVLTRGYGVHLRTMCNTSILEQFVTFPNREVAELTQNVICGSPQHWLNQAEKHFLANLDF
FRPLRSDVRSERNDTTLHVAKATDNLLESLGSVAVELASMRSWSDLRNEILFLTQNATGS
PGQMYQAVSRIVCGHPEGGGLKIKSLNWYEDSNFKAMFGNYNSSEDEPVSVYDNTTTPYC
NNLIKKMETSPISRMIWSALKPLLMGKILYTPHTPATQKIIQEVNRTFQELGILRDLGGM
WDEARPKVWNFMENSEEVNLVRMLLQNNVTAYFFSAQLSGTKWSVQDLSSFLTKQSEDTR
PPGTAYTWRNVLNETDQAIMSISRFMECVNLDKLEAVSTEEKLVNESLGLLDNRKFWAGI
VFPDIDLNSSELPPHVNYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYIWGGFSYL
QDVIEQSIIRAVTGTKEKTGIYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAIII
KSVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLMSAGLLVFALRMGNLLPYSDAG
VIFLFLGSFAVVTIMQCFLISTAFSRANLAAACGGIIYFTLYLPYVLCVAWEDYVGLSAK
VIASLLSPVAFGFGCEYFALFEEQGVGIQWSNLISSPMEGDEYSLTTAIIMMYVDAFIYG
LMTWYIEAVFPGQYGIPRPWYFPFTKSYWFGEGEQNQAPTIQGKKTNSKAVCTEEEPTHL
ELGVYIKNLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSG
TAYIMGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEQKVKAEMDQI
LYDTGLPHKRKSKTSELSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLL
KYRAGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTHLGTGYYLTLVKKEPE
ASLSSSRNSTTTESYIKKDEEDSESSSDAGLGSDHESDAATAICTPWTDSPVAPADISLV
SGLIIKHVPNSRMVEDLGHEITYILPYESAKDGAFVDLFHDLDDHLADLGISSYGVSDTT
LEEIFLKVAEDSGVDTEMMSDGTLPIRRRRRHAFGADHQSCLKPLTEDDNFDGNDSEADP
DSRETDHLNSTDGKGSYQVQSWSLTRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCI
ALVFSLIVPPFGKYPSLALQPWMYEEQVTFISNDAPEDASTQNLLSALTEGPGFGTRCME
GYSIPDAPCNMGDDEWSIPEVTENLWEVFRNANWTMENPSPECECSCDGKKQMLPACPAG
AGGLPPPQIRISDRDVLQNLTGRNISDYLVKTYAQIIGKSLKNKVWVNEFRYGGFSLGAR
STQVLPPAEEIDDAISRVREIFQLRKNTGTAADRFLNSLSAFINGLDTKNNVKIWFNNKG
WHSIGSFLNVMNNGILRANLPPGKDPSKYGITVYNHPLNLTKEQISQVALVTTSVDVLVS
ICVIFAMSFVPASFVVFLIQERVSKAKHMQFISGVQPYLYWLANFTWDMCNYIVPATLVI
IIFVCFQQKAYVSATNLPVLALLLLLYGWSITPLMYPASFLFQIPSTAYVVLTSVNILIG
INGSVSTFVLELFGGDKVGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADALERFGEN
RFRSPLEWDMVGKNLFAMAVEGLVFFIITVLIQYRFFIKPRALRPKLSPIGEEDEDVARE
RQRIVSGAGQGDILELRELTKVYERKKKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKM
LTGDSAVTSGEAFLARKSILREIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPE
GEVCEVAEWGIRKLGLIKYADKAAGSYSGGNMRKLSTAMALIGGPPVVFLDEPTTGMDPK
ARRALWNCIHSVIKMGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDG
YTIILRVAGPEPDLQPVMKFIEIELPGSILKEKHRNMLQYQLPSSLSSLAHIFSILAKHK
DFLQIEDYSVSQTTLDQVFVNFAKDQSDDHCDHSIRRKKVIVNIPLLSLPATLKDEENHK
EHFV |
NT seq |
6855 nt +upstreamnt +downstreamnt
atgtctgtctccactcagctgggcctgctgctgtggaagaacttcacttataggaaacga
cagacgttccagctgctaattgagatcgtatggcccctcttcattttcttcatcttgatt
gctgtgagattgaactaccccccatatgaacaacatgagtgtcactttcccaataaagcc
atgccctcagcaggcaccttgccatggatccagggcattgtgtgtaatgccaataaccca
tgcttccgtcaccccaccccgggagaatctcctggagtagtcggcaacttcaatgattca
ataatatcaagacttttttcggatgccaagaaaatcctcctgtacagtcaaaatgacaaa
agtctggatgggtttaaagagttaatcaatgcagtgaaagacatgcagaacagctcatca
ggtttcaagcttaaagacttcctaaatgacaacgagaccctgtctacattcctcctgcaa
aatgcttccatcacagataatgtggtacaggagattttaatggcagaagtgaacctggaa
aaggtgctaacacgaggctatggggttcatctgaggaccatgtgtaacacttccatcttg
gaacaatttgtgactttcccaaacagagaagtagcagaacttacccaaaacgtgatctgt
ggctcacctcagcactggctgaaccaagccgagaaacacttcctggccaatctggacttc
tttagacctttgaggtcggacgtaagatctgagagaaatgacaccaccctccatgtcgcc
aaagccacggacaacctcttggaaagcctgggttctgtagcggtggagttggccagcatg
cggagttggagcgacctgcgcaatgagatcctcttcctgacccagaatgccactggttcg
cccggtcagatgtaccaggctgtgtcacgaatagtgtgtggacaccctgaaggtggcggc
cttaaaatcaagtcacttaactggtacgaggacagcaatttcaaagcgatgtttggcaac
tacaacagcagtgaagacgaacctgtttctgtctacgacaacacgaccacaccctactgt
aacaatctaataaagaagatggagactagccccatctctcggatgatctggagcgcactg
aaacctctgcttatggggaagattctgtacacacctcacacccctgccacacaaaagatc
atccaagaggtgaacaggacatttcaggagcttggaattctcagagatctgggtggaatg
tgggatgaagccaggcccaaggtgtggaacttcatggagaacagtgaagaggtgaaccta
gtacggatgttactacagaacaatgtcacagcctatttcttcagtgcccagctgagtggt
actaagtggagtgtacaggatcttagtagtttcctgaccaagcagtcagaggacactcgt
ccacctgggacagcttacacatggagaaatgtcttaaatgaaaccgatcaggctattatg
agcatatcccgcttcatggagtgtgtgaatttggataaattagaggctgtgagcactgag
gagaagttagtgaacgagtctcttgggctgctggacaacaggaagttctgggctggaatt
gtcttccctgatattgacctaaacagctcagagcttcctccccatgtcaactacaaaatc
cggatggatattgacaatgtggagcgcaccaacaagatcaaggatgcttactgggaccct
ggccccagagctgacccatttgaggacatgcggtacatttggggcggtttctcttacctt
caggatgttatagagcagagcatcatcagagcagtaacaggaactaaagagaagactgga
atctacatccagcagatgccttatccatgctatgtcgatgacattttcttgcgtgtgatg
agccgctccatgcctctatttatgaccctagcttggatgtactctgtggctataataata
aaaagtgttgtctatgagaaggaagcccgccttaaggagaccatgaggattatgggattg
gacaacggcatcctgtggttcagttggttcatcagcagtcttattccacttctcatgagt
gctggactacttgtgtttgcgctcaggatgggaaacctgcttccctacagtgatgctggt
gtgatcttcctctttttgggatccttcgctgtggtcactatcatgcagtgtttcctcatc
agcacagcattttctcgggcaaacctggctgcggcgtgcggaggaattatttactttaca
ctctacctgccttacgtgctgtgtgtcgcctgggaggattacgtgggtctttctgctaaa
gttatcgctagtcttctttctcctgtggcctttggatttggctgtgagtattttgccctg
tttgaagagcagggagtggggatccagtggagcaacctcatctctagcccaatggaaggg
gatgagtacagtctcactactgccattatcatgatgtacgtcgatgccttcatctatggc
ctcatgacctggtacattgaggcggtgtttcctggtcagtatggtattcccagaccatgg
tacttcccattcaccaagtcttactggtttggagaaggagagcaaaatcaggcacccaca
atacagggaaagaagacaaattcaaaagctgtctgcacagaggaagagcccacgcatctt
gaactaggggtgtatattaagaacttggtgaaggtctatcggcatggcaaaaagcttgct
gtggatggtctgacactgggattctatgagggtcagattacatctttcttggggcacaat
ggagcaggaaaaaccaccaccatgtccatcctgactggcttgtttccaccaacatctgga
acagcatacatcatgggtaaagacatccggtcagagctaagtgccatccggcagagcctg
ggagtttgtcctcagcacaatgtccttttcagcatgctaacagtggaggagcatatctgg
ttctatgcacgactcaaaggcctctccgaacagaaggtgaaggctgagatggatcagatt
ttgtatgacaccggtctgccacacaaacgcaaatccaaaaccagtgaactatctggtggc
atgcagagaaagctttcagtggcccttgcatttgttggagggtcaaaggtggtcattctc
gatgagccaactgccggagtggacccttacgctcgcaggggcatctgggacctcctgctg
aaatatcgtgcaggccgaactatcatcctttccactcatcacatggacgaagcagatatc
ttgggcgatcgtattgccattatctctcatggaaagctatgctgtgtgggctcctctctc
ttcctgaaaactcatctgggaactggatattacttaacactggtgaagaaggaaccagaa
gcttccctgagctccagcagaaactccacaaccactgaatcttatatcaagaaggatgaa
gaagactcggagagcagctcggatgccggtttgggaagtgaccatgagagcgatgccgcc
acagctatctgcaccccgtggacagattcacctgttgctcctgcagacatctctctagtc
tcaggtctaatcattaagcatgtccctaactcacgcatggtggaagatctgggacatgag
atcacctacattctgccttatgaatcggctaaagatggcgcatttgttgacctcttccat
gatttggatgaccatctcgctgatttgggcatctcgagttatggtgtttcagacaccaca
cttgaagagattttcctcaaagtggcagaggacagtggggttgacactgaaatgatgtca
gatggcacactccctatacgcagacgcagacgacatgcttttggagctgatcaccagagc
tgccttaaacccctgactgaggatgacaactttgacggtaacgactctgaagccgaccca
gattcaagagagactgatcacttaaatagtactgatgggaaaggttcataccaagtccaa
agctggagcttgacaagacagcagtttgtggctttgctgtggaaaagattcctgtatgcc
cgtcgttccaggaaaggcttcttcgctcagattgtcctgcctgcagtatttgtgtgcatc
gctctggtctttagtcttattgtacctcccttcggaaaatacccaagtcttgccctgcag
ccatggatgtatgaggaacaagtaacctttatcagcaatgatgcacctgaagacgccagc
actcaaaacctactctcggcactaacagaagggcccggttttggaacacgctgcatggag
ggatattcaataccagatgctccctgtaatatgggtgatgatgaatggtccataccagag
gtcacagaaaatttgtgggaggtgttcaggaatgcaaactggaccatggaaaacccatca
ccagaatgtgaatgcagttgtgatggcaagaaacagatgctcccagcctgccctgctggt
gctggaggtcttccacctccacagataaggatcagtgatagggacgtacttcaaaacctg
actggaagaaacatctcggactacttggtgaagacgtatgcacaaatcattggcaaaagt
ttaaagaacaaggtgtgggtgaatgagttcagatatggaggtttctcactgggtgctaga
agcactcaggttctaccgcctgccgaggagattgatgatgccatttcacgagtgagggaa
atattccaactgcgcaagaacacagggacagcagctgatcgctttctaaacagcctctct
gctttcatcaacggcctggacactaaaaataatgtgaagatctggttcaataacaagggc
tggcacagcattgggtcctttctcaatgtgatgaacaacggtattttgagggccaatttg
cctcccgggaaagacccaagcaaatacggcatcactgtgtacaatcaccccctgaacctt
actaaagagcagatctcccaggtggcactggtgacgacctcagtggacgtactggtgtcc
atctgcgttatcttcgctatgtcatttgtccctgctagctttgttgtctttctcattcaa
gaacgtgtaagcaaggccaagcatatgcaattcatcagtggagtgcagccatacctctac
tggttggccaattttacctgggatatgtgcaattacatcgtcccagcaaccttggtcata
atcatcttcgtgtgctttcaacaaaaagcctatgtgtcagccacaaatctgccagtactc
gccctattgctgcttctatatggatggtccatcactcctctgatgtacccagcttccttc
ctgttccagatccccagcactgcgtacgttgtcctaaccagtgtcaacatactgattggg
atcaatggcagtgtgtccacttttgttctggagttgtttggtggcgataaagttggtggc
atcaatgacatactgaagaatgtcctcttgatcttccctcacttctgtcttggacgaggc
ctgattgacatggtgaagaaccaggccatggctgatgctctcgagagatttggagagaac
cgtttccgctctcctttggaatgggacatggtgggtaagaacctgtttgccatggcagtg
gaaggattagtcttcttcatcatcacggtcctcatacagtaccggttcttcatcaaaccc
agagctcttcgtcctaagctgagtccaattggcgaggaagatgaggatgtggccagggaa
cggcagagaatcgttagtggagcaggacaaggagacatccttgaacttcgagaactcaca
aaggtgtatgaaaggaagaagaagcctgctgtggataggctgtgcgtgggaattcctcca
ggagagtgctttggtctgcttggagtgaatggagctgggaagacaagtacctttaaaatg
ctgacaggagattctgcagttaccagtggagaagcgttcctagctaggaagagtatactc
agggaaatagatgaggtacatcagaacatgggctattgtcctcagtttgatgccatcaat
gacctgctgacaggcagagagcacctggagttctatgccattctgcgtggtgttcccgaa
ggggaagtgtgtgaggtggctgagtggggcatccgcaagctgggcctcataaaatatgct
gacaaagcagctggaagctacagcgggggcaacatgcgcaaactctctacagccatggcc
ctcatcggaggcccaccagtggtctttctggatgaacccaccactggcatggaccccaag
gcccgcagagctctgtggaactgcatccacagtgtcatcaaaatgggccgctcagtcgtg
ctgacttcacacagcatggaggagtgtgaggccctgtgcacccggatggccatcatggta
aacggcagattccgctgtctaggaagcgttcaacatctgaaaaacaggtttggtgatgga
tacaccatcatcctgagagtggcaggacccgaaccagacctgcagcccgtgatgaagttc
attgagatcgagctgcctggtagtatactgaaggagaaacacagaaacatgctgcagtac
cagctgccctcgtccctgtcctctctcgctcacatcttcagcattcttgccaaacataaa
gattttctccagatagaagactactccgtttcacagaccacactggatcaggtgtttgtt
aattttgccaaggaccaaagtgatgatcactgtgaccactccatacgccgtaaaaaggtc
atcgtaaacattcctctgctcagcctaccagcaaccttaaaggatgaggagaatcacaaa
gagcactttgtgtga |