Clostridium gasigenes: J1C67_03410
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Entry
J1C67_03410 CDS
T07299
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cgas
Clostridium gasigenes
Pathway
cgas03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cgas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
J1C67_03410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgas03400
]
J1C67_03410
Enzymes [BR:
cgas01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
J1C67_03410
DNA repair and recombination proteins [BR:
cgas03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
J1C67_03410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
SH3_13
OB_YrrC
UvrD_C_2
AAA_11
Viral_helicase1
HHH_5
Helicase_RecD
PIF1
AAA_22
PhoH
NTPase_1
ATPase_2
SLFN-g3_helicase
AAA
nSTAND3
AAA_23
AAA_5
UvrD-helicase
NPHP3_N
HHH_3
DEAD
AAA_12
DNA_pol_lambd_f
T2SSE
SRP54
HHH_2
AAA_28
cobW
AAA_14
ATP_bind_1
TraI_hel_assoc_N
TrwB_AAD_bind
ABC_tran
AAA_17
AAA_16
PipB2_N
UvrD_C
ResIII
AAA_29
Motif
Other DBs
NCBI-ProteinID:
QSW20263
LinkDB
All DBs
Position
CGAS001:complement(708010..710238)
Genome browser
AA seq
742 aa
AA seq
DB search
MEVLSGLVESILFKSDDTGYVVAKVEINKEIIAIVGILPFLKESQHVKLKGQWMLHKQFG
RQFKVEECEEVLPDSIEGIVKYLSTGVVHGIGPVTAKKIVAAFGDKTLDIMDNHIERLKE
IEGIGEKKFEIIYESYIEQKDLKDIMIHFQGHGMTPNQCIKIYKKFGPMSKDIVSENPYI
LSDEISGIGFMTADKIAKNIGIESTSDFRIQSGIKYVLNQFSLAGNTYMPKDELIKEVVN
VLDVTKELIEENIYNATLENKIKIEKINDVEAVFSLPYYYCELGVTNKIITLSIENFRTI
NTDVEFEVEQFEKDNNIEFAEAQREAIIGAFDNGIEIITGGPGTGKTTIIKSIIEIYEKN
NMKVLLAAPTGRAAKRMAESTGREAKTIHRLLEVGTSDDDKSFFGKGESSPLEGDVIIID
EASMIDIMLMQSLLKAIQLGTRVIIVGDVDQLPSVGPGNVLKDLIESDFIKVVRLNAVFR
QGKESMIVTNAHKINNGEMPCLNKKDGDFFFDHKEDNDEILDTIIDLINRRLPKFNPSLD
KLKDIQILTPMRKGILGVQNLNNKLQESLNPPSSSKKEKEIKEIVFREGDKVMQTKNNYQ
IEWFRINGYGDNEGKGVFNGDMGFIQSINENDKNVIVIFDDEKKVIYDYISLDELDLAYA
ITIHKSQGSEFKVVITPAFMGSPFLMNRNLLYTGITRAKELVVVVGKPKALKYMVDNTNS
SERYSSLKDRILEITAGDNLSE
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggaagttctgagtggattagtagaatctatactatttaaaagcgatgatactggatat
gtagttgctaaagtagaaattaataaagaaataatagctatagttggtatattaccgttt
ttaaaagagagccaacatgtaaagttaaaaggtcaatggatgcttcataagcaatttgga
agacagtttaaagtggaagagtgcgaagaagttcttccagattcaatagaaggaatagtt
aaatatttaagtactggagttgtacatggtataggacctgttactgctaaaaaaatagta
gcagcatttggagataaaactctagatattatggataatcatatagagaggttaaaagaa
atagagggcataggagaaaagaaatttgaaataatatatgaatcttatatagaacaaaaa
gatttaaaagatataatgattcattttcaaggacatggaatgacaccaaatcaatgtata
aaaatatataaaaaatttggaccaatgtcaaaagatatagtttctgagaatccatatatt
ttaagtgatgaaatatcaggaatagggtttatgactgctgataaaatagctaaaaatata
gggattgaaagtacttcagattttagaatacaaagtggaattaaatatgtattaaatcaa
ttttccttagcaggaaacacatatatgccaaaggatgaattgattaaggaagttgttaat
gttttagacgtaacaaaagaacttatagaagagaacatatataatgcaactttagaaaat
aaaattaaaatagaaaaaataaatgatgtggaagctgtattttcattaccatattattat
tgcgaacttggcgtaactaataaaattattacattaagtatagaaaactttagaactatt
aatacagatgtagagtttgaagttgaacaatttgaaaaagataataatatagaatttgca
gaagctcaaagagaagctataattggggcttttgataatggaattgaaataataactggt
ggacctggaacaggtaaaacaacaataataaaatctataattgaaatttatgaaaaaaat
aatatgaaggttttacttgcagcaccaacaggtagagctgcaaagcgaatggcagaatca
acgggaagagaagctaagacaatacatagacttttagaagtaggaacaagtgatgatgat
aaatcattctttggaaaaggggagagctctccactagaaggagatgtaataattatagat
gaggcatctatgatagatataatgcttatgcaaagcttgcttaaagcaattcaactaggt
acaagagttattatagttggtgatgtagatcagttgccatctgtaggacctggaaatgta
ctaaaagacctaattgaaagtgattttataaaagttgttaggttaaatgctgtttttaga
caagggaaagaaagtatgattgtaacaaatgctcataagataaataatggagaaatgcct
tgtttaaataaaaaagatggagatttcttttttgatcacaaagaagataatgatgaaata
ctagatacaataatagatttaataaatagaaggttacctaaatttaatccaagtttagat
aagttaaaagatattcaaatattaacacctatgagaaaaggaatacttggagttcaaaac
cttaataataagcttcaagagagtttaaatcctccatcatcaagtaaaaaagaaaaagaa
ataaaggaaattgtttttagagaaggcgataaggttatgcaaactaaaaataattatcaa
attgagtggtttagaattaatggctatggtgataatgaaggtaagggcgtatttaatgga
gatatgggatttatccaaagtataaatgaaaatgataaaaatgtaatagtaatttttgat
gatgaaaaaaaagtaatttatgattatatatctttagatgaattagatttagcatacgca
ataacaattcataaaagtcaaggaagtgaatttaaagtagtgattaccccagcatttatg
ggttcaccatttttaatgaatagaaatttactttatacaggaataacaagagctaaagaa
ttagttgtagttgtagggaagccaaaagcactaaagtatatggttgataatacaaatagc
agtgagagatattcatctcttaaagatagaatattagaaataacagcaggagataattta
agcgaataa
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