Clostridium gasigenes: J1C67_10680
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Entry
J1C67_10680 CDS
T07299
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cgas
Clostridium gasigenes
Pathway
cgas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J1C67_10680 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgas03019
]
J1C67_10680 (rnr)
03016 Transfer RNA biogenesis [BR:
cgas03016
]
J1C67_10680 (rnr)
Enzymes [BR:
cgas01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
J1C67_10680 (rnr)
Messenger RNA biogenesis [BR:
cgas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J1C67_10680 (rnr)
Transfer RNA biogenesis [BR:
cgas03016
]
Prokaryotic type
tRNA degradation factors
J1C67_10680 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
OB_Dis3
OB_HELZ2
S1CSD-TOTE-2
Rho_RNA_bind
S1_RRP5
AAA_33
Motif
Other DBs
NCBI-ProteinID:
QSW18037
LinkDB
All DBs
Position
CGAS001:2280579..2282798
Genome browser
AA seq
739 aa
AA seq
DB search
MGMKKTLLNFMREEAYRPMDIQELVTVFDISQEEYKPFKKTLKTMEKEGTIIRTKKDKFG
IPERMGLVRGKLQAHQKGFGFLIPETEGERDVFIPSSFMNGAMNGDKILVQVTKEDKNGT
KKREGEVVDILERGNSKIIGIYEGNKNFGFVVPEDTRLNQDIFVSKKDKNGAEDGDVVVV
EITRWPDQRRSPEGVVEQVLGKKGDKGLDILTIIKKYGLPEEFSEKILSYAEGVSETIED
KEYRRRKDLRNMKMVTIDGEDAKDLDDAVSIEKLENGTFKLGVHIADVTHYVREQSPLDK
EAFDRATSVYLLDRVIPMLPRKLSNGICSLNPSVDRLTLSCFMTIDQSGKIIDHEIAETI
INTTARMTYTDVTKILKDKDAELIKKYENLHQDFLDMEELCAILRNKRMRRGAIDFDFPE
SKIILNELGKPVDIKPYERGIANKIIEEFMLAANETVAEYMHWAHMPFVYRIHEEPDEEK
LTKFKEFVYNLGYGIRWTQDVQPKLLQEVLEKVKGKPEEPVVSKLLLRSMMQAKYSPECV
GHFGLAAKYYCHFTSPIRRYPDLQIHRIIKEHLNAKIDEKRAEKLAVIVDQTSKQSSERE
RVAEQAEREVDDLKKAEYMQNRIGEEFEGMISSVTSFGIFVQLPNTIEGLVHITELDDDY
YIYDEAHLCLIGERTKKVYRLGAVVKVKCTKVDIDNREVYFNLTEEEEAPKTEIKANKKL
VDELLEVKEEMKTNYVDEE
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgggaatgaaaaaaacgcttttaaactttatgagggaagaagcttacagaccaatggat
atacaagaactagtaacagtatttgatatatcacaagaggaatataagccttttaaaaag
actttaaaaacaatggaaaaagaaggtacaataataagaactaaaaaagataaattcggg
attccagaaagaatgggactagtaagaggtaaacttcaagctcaccaaaaaggttttggg
ttcttaataccagaaactgaaggtgaaagagatgtatttatcccaagttcatttatgaat
ggagctatgaacggagataaaatattagttcaagtaacaaaagaagataaaaatggaact
aaaaaaagagaaggtgaagttgttgatatccttgagagaggaaacagcaaaattatcggt
atatatgaaggtaataagaacttcggttttgtagttccagaagatacaagattaaatcaa
gatattttcgtatctaaaaaagataaaaatggagcagaagatggagatgtagttgttgtt
gaaataactagatggccagatcaaagaagaagcccagaaggtgtagttgaacaagtactt
ggtaaaaaaggagataagggccttgacatattaactataattaaaaaatatggtctgcct
gaagagttctctgaaaaaatattaagctatgcagagggtgtatcagaaacaattgaagat
aaagaatatagaagaagaaaagatttaagaaatatgaaaatggtaacaatagatggagaa
gatgctaaggatttagatgatgcggtatcaatagaaaaattagaaaatggaacatttaaa
ttaggagttcatattgcagatgtaactcattatgttagagaacaaagtcctctagataaa
gaagcatttgacagagcaacttctgtttatttactagatagagttataccaatgctacca
agaaagctttcaaatggtatttgttcattaaacccaagtgttgatagattaacattaagc
tgctttatgacaatagatcaatcaggaaaaattatagatcatgaaatagctgaaactata
attaatacaacagcaagaatgacttatacagatgttactaaaattttaaaagataaagac
gcagaacttataaagaaatatgaaaatctacatcaagatttcttagatatggaagagctt
tgtgcaattcttcgtaataaaagaatgagaagaggagctatagattttgatttcccagaa
tctaaaataatattaaatgaacttggaaaaccagttgatattaagccttacgaaagagga
atagctaataaaataatagaagaatttatgttagcagcaaatgaaacagttgcagaatat
atgcattgggcacatatgccatttgtttatagaattcatgaagaaccagatgaagaaaaa
ttaactaagtttaaagagtttgtttataatttaggatatggaattagatggacacaagat
gttcaacctaaactgctgcaagaagtacttgaaaaggtaaaaggaaaaccagaagaacca
gtagtaagtaaattattattacgttcaatgatgcaagctaaatattcaccagaatgtgta
ggtcactttggtcttgcagctaaatattactgtcactttacatcaccaataagaagatat
ccagatcttcaaatacacagaattataaaagagcatttaaatgctaaaatagatgaaaaa
agagcagaaaaattagctgtaatagttgatcaaacttcaaaacaatcatcagaaagagaa
agagttgcagaacaagcagaaagagaagttgatgatttaaagaaagctgaatacatgcaa
aatagaataggtgaagaatttgaaggaatgatatcatcagtaacttcatttggtatattt
gtacaactaccaaacactatagaaggtttagtccatattactgaattagatgatgattat
tatatatatgatgaagctcatttatgtttaataggtgaaagaactaaaaaagtatataga
cttggagcagtagttaaagttaaatgtacaaaagtagatatagataatagagaagtctac
tttaatttaacagaagaagaggaagcaccaaaaacagaaattaaggcaaataaaaaacta
gttgatgaattactagaagttaaagaagagatgaaaacaaactacgtagacgaagagtag
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