Corynebacterium glutamicum ATCC 13032 (Bielefeld): cg1307
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Entry
cg1307 CDS
T00244
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cgb
Corynebacterium glutamicum ATCC 13032 (Bielefeld)
Pathway
cgb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
cg1307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgb03019
]
cg1307
03009 Ribosome biogenesis [BR:
cgb03009
]
cg1307
Enzymes [BR:
cgb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
cg1307
Messenger RNA biogenesis [BR:
cgb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
cg1307
Ribosome biogenesis [BR:
cgb03009
]
Prokaryotic type
rRNA helicases
cg1307
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
adh_short
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CAF19860
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All DBs
Position
1211402..1213600
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AA seq
732 aa
AA seq
DB search
MSNTENVNGDVEQPNNVISSESQETPQGDSASADFALETPTNTVEDAPASEGSEEITRVA
DTSEDADSADADNASNVINENEDSSEGANQPSNESSSTEAKSGFDALGLPERVLDAVRKV
GYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPILARIDKSVRSPQALVLAPTR
EQALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRRGAHIVVGTPGRIIDHLEKGS
LDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVALFSATMPNGIRRLSKQYLNN
PAEITVKSETRTNTNITQRFLNVAHRNKMDALTRILEVTEFEAMIMFVRTKHETEEVAEK
LRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERISHVLNFDIPN
DTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERATNAPLHEMELPTVDQVNDFRK
VKFADSITKSLEDKQMDLFRTLVKEYSQANDVPLEDIAAALATQAQSGDFLLKELPPERR
ERNDRRRDRDFDDRGGRGRDRDRGDRGDRGSRFDRDDENLATYRLAVGKRQHIRPGAIVG
ALANEGGLNSKDFGRITIAADHTLVELPKDLPQSVLDNLRDTRISGQLINIERDSGGRPP
RRFERDDRGGRGGFRGDRDDRGGRGRDRDDRGSRGGFRGGRDRDDRGGRGGFRGRDDRGD
RGGRGGYRGGRD
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgagtaataccgagaacgtcaacggcgacgtagaacagccgaataacgtcatttcgtcg
gaatctcaggaaaccccgcagggtgactcagcatcagctgacttcgctctcgaaacccca
accaacactgttgaagatgcaccagcatctgagggtagcgaagagatcaccagggttgcg
gatacttctgaggacgccgactctgcagatgcagacaacgcgagcaatgtaatcaatgag
aatgaggactcctcggaaggtgctaaccagccttcaaacgagtcatcctctacggaagcc
aaatccggcttcgatgcactcggactgccagagcgtgttcttgacgctgtgcgcaaggtg
ggttacgaaactccttccccaattcaggcacaaaccatcccaatcctcatggagggccag
gatgttgttggtctagcacagaccggtaccggtaagactgcagctttcgcgctgccaatc
cttgcccgtattgacaagtccgtgcgcagcccacaggcacttgtgcttgcccctacccgt
gagcaggcacttcaggttgctgactccttccaatccttcgctgaccacgtcggtggcctg
aacgttctgccaatctatggtggacaggcttacggcattcagctctctggcctgcgtcgt
ggcgctcacatcgtcgtgggtaccccaggccgaatcatcgatcacctcgaaaagggctcc
ctggatatctccggactgcgcttcctcgtgctcgatgaagcagacgagatgctgaacatg
ggcttccaggaagatgtcgagcgcatcctcgaggacaccccagacgagaagcaggttgca
ctattctccgcaacgatgccaaacggcattcgtcgcctgtccaagcagtacctgaacaac
cctgctgaaatcaccgttaagtccgagaccaggactaacaccaacatcacccagcgcttc
ctcaacgttgcacaccgcaacaagatggatgcactgacccgtattctcgaggtcaccgag
tttgaagcaatgatcatgttcgtgcgcaccaagcacgaaactgaagaagttgctgaaaag
ctccgtgcacgcggattctccgcagcagccatcaacggcgacattgctcaggcacagcgt
gagcgcaccgtcgaccagctgaaggacggccgcctggacatcctcgttgcaaccgacgtt
gcagcccgtggtcttgacgttgagcgcatctcccacgtgcttaacttcgacattccaaac
gacaccgagtcctacgttcaccgcatcggccgcaccggccgtgcaggacgtaccggcgag
gcaatcctgttcgtgaccccacgtgagcgtcgtatgcttcgctccatcgagcgcgcaacc
aacgcaccactgcacgaaatggaactgccaaccgtcgatcaggtcaacgacttccgcaag
gtcaagttcgctgactccatcaccaagtccctcgaggacaagcagatggacctgttccgc
accctggtcaaggaatactcccaggccaacgacgttcctctagaggacatcgcagcggca
ctggcaacccaggcacagtccggcgacttcctgctcaaggagctcccaccagagcgccgt
gagcgcaacgaccgccgtcgtgaccgtgacttcgacgaccgtggtggacgtggacgcgac
cgtgaccgtggcgaccgcggagatcgtggctcacgcttcgaccgcgacgacgagaacctg
gcaacctaccgcctcgcagtgggcaagcgccagcacatccgcccaggcgcaatcgttggt
gcacttgccaacgaaggtggcctgaactccaaggacttcggccgcatcaccatcgcagcc
gaccacaccctggttgaactgccaaaggatctcccacagagcgttcttgacaacctgcgc
gacacccgcatctccggccagctcatcaacatagaacgcgactccggtggacgcccacca
cgccgcttcgagcgcgatgaccgtggcggacgcggcggattccgcggcgaccgtgatgac
cgcggtggacgtggacgtgaccgtgacgatcgtggaagccgtggaggtttccgcggtgga
cgtgaccgtgatgatcgtggcggacgcggtggattccgcggacgcgacgaccgcggagac
cgtggtggccgtggcggttaccgtggcggacgcgactaa
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