Cyanobium gracile: Cyagr_0548
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Entry
Cyagr_0548 CDS
T02359
Name
(GenBank) exoribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cgc
Cyanobium gracile
Brite
KEGG Orthology (KO) [BR:
cgc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cgc03016
]
Cyagr_0548
Enzymes [BR:
cgc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Cyagr_0548
Transfer RNA biogenesis [BR:
cgc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Cyagr_0548
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AFY27739
UniProt:
K9P597
LinkDB
All DBs
Position
complement(558826..560865)
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AA seq
679 aa
AA seq
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MPSASRRFTAGDLVGLHDDSRCLLAVVVAEKGTRLDLKVGFEAKAVQRGVRQVDLLAALP
GDQSPPSRLSQPPWGLSPETLQQAAPRPRELGAAWLLLLDDPSSLELGDFVDLIGDGGDA
VQRAACWLWLQGPQTLFRWRQQQVEARPLVDVRRLRREARRQQLAEQRRRQWQDALRQRR
PIDPQQLDAEQRQHLALLREWASGDTSRPLPDDLHRVLQAAHCAMESAPIRHLLVDLGQW
ERHHLPSLENTTWQAGFSAELEAEARRLVELADSPQPGDERRRDLTGLHTVTIDDADTRD
IDDGLSLEHGPDGAPRLWIHIADPGRLVAPESPLDKEARRRASSLYLARGPLPMFPEVLS
TGPMSLRMGERSAALSLWVELTEDGAVAGFGLESSWVRPAYRLSYADADELIELAPPQER
YLEEIHALMERRRRWRLARGALDLDQPEGRIRCDELGAQLEITEPSPARTLVAEAMILAG
AVIAGLGQEQGLALPYRSQLAAELPPEAELAALPAGPVRHAAIKRCLSRGLLGTSPAPHF
SLGLPCYVQATSPIRRYNDLLVQRQLLAHQQGQPVLEEAELGALLGELEGAIRQGLQIAR
EDQRHWQQVWFEAQDQHQWPGVFLRWLRPQDRLGLVHLPDLAMDLAAECHGDPAPGDALL
VRLQQVDSLRDLLRFTAAG
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
ttgccctccgcctcgcgtcggttcacggcgggtgacctggtcggcctccacgacgacagc
cgctgtctgctggcggtcgtggtggccgagaaaggcacgcgcctcgatctcaaggtgggt
ttcgaggccaaggccgtccagcggggggtccggcaggttgatctgctggccgctcttccg
ggcgatcaatcccctccctcccgcctgtcccagcccccctggggcctgagtccggagacg
ttgcagcaggccgccccccgcccccgggagctgggggcggcctggctgttgctgctggac
gacccgtcgtcccttgagctgggggacttcgttgacctgatcggagacggcggcgacgcg
gtccagcgggccgcctgctggctgtggctgcagggcccccagaccctgttccgctggcgc
cagcagcaggtggaggcccggccgctggtggatgtgcgccggctgcggcgggaagcccgc
cgtcagcagctggccgagcagcgacggcgccagtggcaggacgccctgcgccagcgccgc
ccgatcgatccgcagcagctcgatgccgaacagcgccagcacctggccctgttgcgggag
tgggccagcggcgacaccagccgccccctgcccgacgacctgcaccgggtcctgcaggcg
gcccactgcgcgatggagtcggcgccgatccggcacctgctggtggacctgggccagtgg
gagcggcaccacctcccctcgctggagaacaccacctggcaggcgggtttctccgctgag
ctggaggccgaggcccggcggctggtggagctggccgactcaccccagcccggagacgag
cgccgccgcgacctcaccggcctgcacaccgtcaccatcgacgatgcggacacccgcgac
atcgacgacggtctctccctggagcacggccccgacggggcgccgcggctgtggatccat
atcgccgatcccggccggctggtggcaccggagagccccctcgataaagaagcccggcgc
cgcgccagcagcctgtacctggcccggggccccctgccgatgttccccgaggtgctcagc
accggcccgatgagcctgcgcatgggcgagcgcagcgctgcgttgagcctgtgggtagag
ctgaccgaggacggcgcggtggcgggctttgggctggagtccagctgggtgcggcccgcc
tatcggctgagttatgccgatgccgatgagctgatcgagctggccccgccccaggagcgg
tacctcgaggagatccacgccctgatggagcggcggcgccgctggcggctggcccgtggg
gccctcgatctggatcagcccgaggggcgaatccgctgtgacgagctgggggcccagctg
gagatcaccgaaccctcgccggcgcgcacgctggtggccgaagccatgatcctggccggg
gcggtgatcgccggcctcggccaggagcaaggcctggctctgccctaccgaagccaactg
gcggcggagctgccccccgaagcggagctggcggccctaccggccggcccggtgcggcac
gcggccatcaagcgctgcctcagccggggactgcttggcaccagtccggctccccacttt
tccctgggcctgccctgctacgtgcaggccacctcaccgatccgccgttacaacgaccta
ctggtgcaacgccagctgctggcccaccagcaggggcagccggtgctggaggaggccgag
ctgggtgccctgctgggcgaactggagggggccatccgccagggcctgcagatcgcccgc
gaagaccaacgccactggcagcaggtttggttcgaggcccaggaccagcatcagtggccg
ggggtgttcctgcgctggctgcggccccaggaccgcctcggcctggtgcacctgccggat
ctggccatggacctggccgcggagtgccatggcgaccccgcccccggcgacgccctgctg
gtgcggctacagcaggtggattccctgcgggacctgctgcgcttcacggccgcgggctga
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