Cyanobium gracile: Cyagr_0700
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Entry
Cyagr_0700 CDS
T02359
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cgc
Cyanobium gracile
Pathway
cgc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cyagr_0700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgc03019
]
Cyagr_0700
Enzymes [BR:
cgc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cyagr_0700
Messenger RNA biogenesis [BR:
cgc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cyagr_0700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AFY27888
UniProt:
K9P4I7
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All DBs
Position
724291..725553
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AA seq
420 aa
AA seq
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MAGLATDFAVLGLSEPILKAVAAKGYSSPSPIQRQCIPAVLAGHDVMAAAQTGTGKTAGF
TLPMLERLRHGPHARAGVVRALVLTPTRELAAQVADSVTAYGRYLDLRSDVVFGGVSANP
QMQRLRRGADVLVATPGRLMDLHQQNALRLDRVEILVLDEADRMLDMGFIRDIRRILSLL
PAKRQNLLFSATFSTEIRRLATGLLHTPVQLQATPENQAAPLVEQVIHPCDMDRKGDLLS
HLIRTNDWGQVLVFSRTKHGANRLAERLEKEGLGAAAIHGNKSQGARTRALAEFKSGEVR
VLVATDIAARGIDIHQLPHVVNLDLPNVAEDYVHRIGRTGRAGQNGHAISLVAAEEHELL
RAIERLVGSPLPRQEVAGFEPTVLSAPPLDLSGGRGRRSQGPRHGQGQGHERGRRRSGSR
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
gtggccggactggcgacggatttcgccgtgttgggtctctcggagccgatcctcaaggcc
gtggccgccaagggctacagcagcccctccccgatccagcggcaatgcatccccgccgtg
ctggcgggccacgacgtgatggcggccgcccagacgggcaccggcaagacggccggcttc
accctgccgatgctggaacggctgcgccacggtccccatgcccgcgcgggcgtggtgcgg
gccctggtgctgacgcccacccgcgagctggcggcccaggtggcggacagcgtcaccgcc
tacggccgctacctggatctgcgctccgacgttgtcttcggtggcgtgagcgccaacccc
cagatgcagcggctccgccgcggtgccgatgtgctggtggccacccccggccggctgatg
gacctgcaccagcagaacgccctgcggctcgaccgggtcgagatcctggtgctcgatgaa
gccgaccggatgctcgacatgggcttcatccgcgacatccgccggatcctctccctgctc
ccggcgaagcgtcagaacctgctgttctcagccaccttctccaccgagatccgccggctg
gccacgggcctgctgcacaccccggtgcagctccaggccacgcccgagaaccaggccgca
cccctggtggagcaggtgatccatccctgcgacatggaccgcaagggggatctgctcagc
cacctgatccgcaccaacgactggggtcaggtgctggtgttctcccgcaccaagcacggc
gccaaccggctggcagaacggctcgagaaggaggggctcggggcggcggcgatccacggc
aacaagagccagggggcccgcacccgggcgctggcggagttcaagagcggcgaggtgcgg
gtgctggtggccaccgacatcgccgcccgcggcatcgacatccaccagctgccccacgtg
gtcaacctcgacctgcccaacgtggccgaggactacgtgcaccgcatcggccgcaccggc
cgggcgggccagaacggccatgccatttccctggtggcggccgaagagcatgagctgctg
cgggccatcgaacgcctggtcggctcccccctgccccgccaggaggtggcgggcttcgag
cccaccgtgctctccgccccgcccctggatctcagtggcggccggggacgccgcagccag
ggcccccgccacgggcagggccagggccacgagcgcggccggcgccgcagcggttcccgc
tga
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