Cyanobium gracile: Cyagr_0909
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Entry
Cyagr_0909 CDS
T02359
Name
(GenBank) Viral (Superfamily 1) RNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cgc
Cyanobium gracile
Pathway
cgc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cgc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Cyagr_0909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgc03400
]
Cyagr_0909
Enzymes [BR:
cgc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Cyagr_0909
DNA repair and recombination proteins [BR:
cgc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Cyagr_0909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
PhoH
AAA_22
UvrD-helicase
nSTAND3
Helicase_RecD
AAA
AAA_28
DEAD
UvrD_C
SH3_13
TrwB_AAD_bind
Motif
Other DBs
NCBI-ProteinID:
AFY28091
UniProt:
K9P5U1
LinkDB
All DBs
Position
911284..912972
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AA seq
562 aa
AA seq
DB search
MREPLQTAQPWVGALALSLAEALPRLHGTPPDPLVGELIAALTAALARGELELDLRGPRP
AEVSEAAWPEGHRRALAASSLAGDPDGPLALEEGRLQWRRWQRQRQAVLEALVDRAGALV
PGGDGEAPGAAEPGAAGPGAAGPGAAEPGAPRSLDARQRQALAAVLRHGLVLLEGGPGTG
KTSTVAAMIAAHRVHQPDARIHLAAPTGKAAGRLRAATGGALPCTTLHRLLESRGDRFGR
HRGRPLDLDLLVVDEVSMVDLGLMGALLEALPSACRLVLVGDPAQLPPIAPGAVLQDLQR
PEHRRRLGGAAITLTTTYRNAGAIAAVAAALRQGLGAAPAPQDPDPIAAIRPLLQALDDT
DNLHWRPCSPRTLPAELLERLRRHQDALARLAGHCRPGSPRGCRALLAERDRLLVMAPQR
QGRWGLEAIHRTLLGARRDGDLQDLPPGTPVLCRRNLPELDLANGDVGVLVGGPGPSARL
LFGDGEGEPLWIHPGQLAGAAEPALALTVHKAQGSEAEEVIVLLPSGTARDGRLLYTALT
RARQAALLISEQEDGPMAGKGP
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgagggaacccctccagaccgcccagccctgggtgggagccctcgccctcagcctggcc
gaagctctgccccgtctccatggcaccccccccgatcccctggtcggcgagctgatcgcc
gccctcaccgcggccctggcccggggcgagctggagctggatctgcggggcccgagaccg
gcggaggtcagcgaagccgcctggccagaggggcaccgccgggccctggccgccagttcg
ctcgccggcgatccggacgggcccctggccctggaggagggccgactgcagtggcgccgc
tggcagcggcagcggcaggcggtgctcgaggcgctggtcgatcgggccggagccctggtg
ccgggcggcgacggcgaagctcccggtgctgcggagcccggcgctgcgggtcccggtgct
gcgggtcccggtgctgcggagcccggcgccccccggagcctcgatgcccggcagcggcag
gcgttggcggcggtgctccgccacggtctggtgctgctggagggtggacccggcaccggc
aagaccagcacggtggcggccatgatcgcggcccaccgggtgcaccagcccgacgcccgc
atccatctggcggcgcccaccggcaaggcggcgggccggctgcgggcggccaccgggggc
gcccttccctgcaccaccctgcaccggctgctggagagccgcggcgaccggttcggccgc
caccgcggccgccccctcgacctcgacctgctggtggtcgatgaggtctcgatggtggat
ctgggcctgatgggcgccctgctggaggctctgcccagcgcctgtcggctggtgctggtg
ggcgacccggcccagctgcccccgatcgctcccggggccgtgctgcaggacctgcagcgg
cccgaacaccgccgccggctggggggcgccgccatcaccctgaccaccacctaccgcaac
gccggggccatcgccgccgtggccgccgccctgcgccaggggctgggagcggcccccgcc
ccgcaggatccggatccgatcgccgccatccgccccctgctgcaggccctggatgacacc
gacaacctgcactggcgcccctgctccccccggactctgccggcggagctgctggagcgg
ctgcgccgccaccaggacgcgctggccaggctggcggggcattgccggccgggctccccc
cggggatgccgggcgctgctggcggaacgggaccgcctgctggtgatggcgccccaacgc
cagggacgctggggcctggaggcgatccaccggaccctgctgggggctcggcgggacggc
gacctgcaggatctccccccgggcacccccgtcctctgccgccgcaacctgccggaactg
gacctggccaacggcgatgtgggcgtgctcgtgggcggccccgggccctcggcgcgcctg
ctgttcggggacggggagggggagccgctctggatccatcccggccagctggccggggcc
gccgaaccggccctcgccctgacggtccacaaggcccagggcagcgaagccgaggaggtg
atcgtgctgctgcccagcggcaccgcccgcgacgggcggctgctctacaccgccctgacc
cgggcgcggcaggcggcccttctgatcagcgagcaagaggacgggcccatggccgggaaa
ggcccgtaa
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