Cyanobium gracile: Cyagr_0911
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Entry
Cyagr_0911 CDS
T02359
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cgc
Cyanobium gracile
Pathway
cgc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cyagr_0911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgc03019
]
Cyagr_0911
03009 Ribosome biogenesis [BR:
cgc03009
]
Cyagr_0911
Enzymes [BR:
cgc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cyagr_0911
Messenger RNA biogenesis [BR:
cgc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cyagr_0911
Ribosome biogenesis [BR:
cgc03009
]
Prokaryotic type
rRNA helicases
Cyagr_0911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
B12-binding
UTP25_NTPase-like
Cas3-like_C_2
DEDD_Tnp_IS110
Motif
Other DBs
NCBI-ProteinID:
AFY28093
UniProt:
K9P521
LinkDB
All DBs
Position
913842..915764
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AA seq
640 aa
AA seq
DB search
MTQIIDGSTLTGAADSQAALAQPCEAVSLSAPDLAVTATEQADGPSDDDAPKATVSETNA
STTTATDTTGLETTVPVSAFAAFGLRQELLDGLAAIGFEEPSPIQKAAIPELMLGRDLVG
QAQTGTGKTAAFGLPLLERLDPGQRTPQVLVLTPTRELAMQVAEAFNSYAARMKGVKVLP
VYGGADFRDQIQQLRRGVQIVVGTPGRVMDHMRQGTLDLSGLRSLVLDEADEMLRMGFID
DVKWVLEQLPAERQVVLFSATMPPEIRRISQNHLRNPAEITIRQKAADGRRIRQRHLVVN
GPQKLEALERVLEAEGSEGVIIFARTKAITLTVAESLEQHGYDVAVLNGDVPQTQRERTI
ERLRDGRVNVLVATDVAARGLDVDRIGLVINYDIPFDGEAYVHRIGRTGRAGRSGEAILF
LTPRERRFLGGLERAVNQPIEPMEVPGNASINQHRLDRLRQKLTTALQQPACNPEERALL
GEILQRVAQEQACTPEQLALAALELGLGGKPLLLQGEERWGQGRASAPTRERDRDRGERD
RGGERRPFSDRTQERGEDGPEDNMERFRIEVGWRDRVKPGNIVGAIANESGLAGRSIGKI
RIFDAHSTVDLPKGMPDDVFSDLRRLRVMNKELQISRLGS
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
gtgacccagatcattgacggcagcaccctcaccggtgctgccgattcccaggcggccctc
gcgcagccctgcgaggccgtgtcgttgtcggcacccgaccttgcggtgaccgccaccgag
caggccgatggcccctccgacgacgacgcccccaaagccaccgtctccgaaaccaacgcc
tcgacaaccaccgccaccgacacgaccggcctcgaaaccacggtccccgtcagcgcattc
gccgccttcgggctgcgccaggagctgctcgacggcctggccgccatcggcttcgaagag
ccctcaccgattcagaaggccgcgatccccgagctgatgctcggccgcgacctcgtgggc
caggcccagaccggcaccggcaagacggccgccttcggtctgcccctgctggagcgcctc
gatcccggccagcgcaccccccaggtgctcgtgctcacccccacccgcgaactggcgatg
caggtggcggaggctttcaacagctatgcggcccgcatgaagggcgtcaaggtgctgccc
gtctatggcggcgccgacttccgcgatcagatccagcagctgcgccggggcgttcagatc
gtcgtgggcacccccggccgggtgatggatcacatgcgccagggcaccctcgacctctcc
ggcctgcgcagcctggtgctggacgaggccgacgagatgctgcgcatgggcttcatcgac
gacgtcaagtgggtgctcgagcagctccccgccgagcggcaggtggtgctgttctccgcc
accatgcccccggagatccggcgcatctcccagaaccacctgaggaacccagccgagatc
accatccgccagaaggccgccgacggtcgccgcatccgccagcggcacctggtggtcaac
ggtccccagaagctcgaggcgctcgagcgggtgctggaggccgagggcagcgaaggggtg
atcatctttgcccgcaccaaggccatcaccctcaccgtggccgagtccctcgagcagcac
ggctacgacgtggcggtgctcaacggcgacgtgccccagacccagcgggaacgcacgatc
gagcggctccgtgacggccgcgtcaatgtgctggtggccacggacgtggccgcccggggc
ctcgacgtcgaccgcatcggcctggtcatcaactacgacatccccttcgacggggaggct
tatgtgcaccgcatcggccgcaccggccgtgccgggcgcagcggggaggcgatcctgttc
ctcaccccccgggagcggcgcttcctcggaggcctggagcgggcggtgaaccagcccatc
gaaccgatggaggtgccgggcaacgccagcatcaatcagcaccgcctcgaccggctgcgc
cagaaactcaccacagccctgcagcagcccgcctgcaaccccgaggagcgggccctgctc
ggcgagatcctgcagcgcgtggcccaggaacaggcctgcacacccgaacagctggccctg
gccgccctggagcttggactggggggcaagcccctgctgctgcagggggaggagcgctgg
ggacagggccgcgccagcgcccccaccagggagcgcgaccgtgaccggggtgagcgtgac
cggggtggggaacgccgccccttcagcgaccgcactcaggaacgcggcgaagacggtccc
gaggacaacatggaacggttccgcatcgaagtgggctggcgggatcgggtcaagccgggc
aacattgttggtgccatcgccaacgagtccggcctggccggacgatcgatcgggaagatt
cgcatcttcgacgcccacagcaccgtcgacctgcccaagggcatgcccgatgacgtcttc
tccgacctgcgtcgcctgcgggtgatgaacaaggaacttcagatctcgcggctgggctcc
tga
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