Cyanobium gracile: Cyagr_2980
Help
Entry
Cyagr_2980 CDS
T02359
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cgc
Cyanobium gracile
Pathway
cgc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cyagr_2980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgc03019
]
Cyagr_2980
03400 DNA repair and recombination proteins [BR:
cgc03400
]
Cyagr_2980
Enzymes [BR:
cgc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cyagr_2980
Messenger RNA biogenesis [BR:
cgc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cyagr_2980
DNA repair and recombination proteins [BR:
cgc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Cyagr_2980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
DUF7528
Motif
Other DBs
NCBI-ProteinID:
AFY30066
UniProt:
K9PBE4
LinkDB
All DBs
Position
2914036..2915532
Genome browser
AA seq
498 aa
AA seq
DB search
MGADPLTESLRRHFGWESFRPGQRPVVEALLAGRDCLAVLPTGAGKSLCFQLPALVRDGL
VVVISPLVALMQDQVSQLQAHGIPAACLHRGLDPGQRRQLQQRLVANRLRLLYLAPERAQ
AEATRQLLDEALETGRLVALAVDEAHCISAWGHDFRPDYRRLGQLRALCPGVPLVALSAT
AAPQVRADIIRLLQLRRPLVQVRSARRGNLAYTMRRRPSDPLAEVVAAIGEARGAVLIYA
RTRRSVEQWAARLTAAGVEAIAYHAGMDPESRQLALRHFQEHPAPVLVATVAFGMGVDRP
DVGLVLHLDLPASAEGYLQESGRAGRDGLPARCLVLFDPADRTSLGWAMRSAGQQLPPDQ
RLLERHRLELAQQQLRRIEAVAEGEGCREQALLLAVGEISSPCGRCDNCLSAPSRSDWAP
QAAVLLSALEDRSGRDLRGLAEDLAGAHGEPEPSWAWLARRLVQEELISESDDGAQRLYL
RPVGRSYLRDPWPLRWSA
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
ttgggggccgatcccctcaccgagagcctgcggcgccatttcggctgggagagcttccgg
cccggacagcgcccggtggtggaagccctgctcgccggccgcgattgcctggcggtgctg
ccgaccggggcggggaagtcgctctgcttccagctccccgccctggtgcgggacggtctg
gtggtggtgatctcccccctggtggccctgatgcaggaccaggtgagccagctgcaggcc
catggcatcccggcggcctgtctgcaccgggggctggatccagggcagcgccgccagctg
cagcagcgcttggtggccaaccggctgcggctgctctatctggctcccgagagggcccag
gcggaggccacccgccagctgctcgatgaggccctcgagaccggccggctggtggccctg
gcggtggatgaggcccactgcatcagcgcctggggccatgatttccgtcccgattaccgg
cgcctgggccagctgcgggccctctgtccgggcgtgccgctggtggccctcagcgctact
gccgccccccaggtgcgggccgacatcatccgcctgctgcagctccgccgacccctggtg
caggtgcgctccgcccgccgcggcaacctcgcctacacgatgcggcggcgcccctccgat
cccctggcggaggtggtggcggcgatcggcgaggcccgtggggcggtgctgatctatgcc
cgcacccgtcgctcggtggagcagtgggccgcgcgcctgacggcggccggggtggaggcg
atcgcttaccacgccggcatggaccccgagagccgccagctggccctgcgccatttccag
gagcatcccgcgccggtgctggtagcaaccgtggccttcggcatgggggtcgatcgtccc
gacgtgggtctggtgctgcacctcgacctgccggccagcgccgagggctacctgcaggaa
tccgggcgggccggtcgcgacgggctgcccgcccgttgcctggtgctcttcgatccggcc
gatcgcaccagcctgggctgggccatgcgctccgccggccagcagctcccccccgaccag
cggctgctggagcgccaccggctcgaactggcccagcagcagctgcggcgcatcgaggcg
gtggccgaaggggagggctgccgggagcaggccctgctcctggccgtgggggagatctcc
tcgccctgcggccgctgcgacaactgcctctcggcgccgtcccgcagcgactgggccccc
caggccgccgtgctgctctccgccctggaggaccgcagtggccgcgacctgcgcggcctg
gcggaggacctggccggtgcccacggggagcccgagccctcctgggcctggctcgcccgc
cggctggtgcaggaggagctgatcagtgagagcgatgacggagcccagcgcctctacctg
cgccccgtgggccgcagctacctgcgggatccctggcccctgcgctggtcggcctga
DBGET
integrated database retrieval system
