Cyanobium gracile: Cyagr_3032
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Entry
Cyagr_3032 CDS
T02359
Name
(GenBank) DNA-directed RNA polymerase, beta'''' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cgc
Cyanobium gracile
Pathway
cgc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cgc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Cyagr_3032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgc03021
]
Cyagr_3032
03400 DNA repair and recombination proteins [BR:
cgc03400
]
Cyagr_3032
Enzymes [BR:
cgc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Cyagr_3032
Transcription machinery [BR:
cgc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Cyagr_3032
DNA repair and recombination proteins [BR:
cgc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Cyagr_3032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AFY30114
UniProt:
K9PC05
LinkDB
All DBs
Position
2960735..2964844
Genome browser
AA seq
1369 aa
AA seq
DB search
MTATPAKKISKKSAKAAADLAAANAAAAAAASALSKQAPPFRNRIIDKKALRNLVSWAYK
HHGTAATAAMADELKDLGFHYATQAAVSISVDDLRIPGDKAVLLEEAEEQITATEERYRL
GEITEVERHTKVIDTWTETNERLVAAVRRNFNDNDPLNSVWMMANSGARGNMSQVRQLVG
MRGLMANPQGEIIDLPIRTNFREGLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVD
VAQDVIVREEDCGTHRFIPINADERGRFGTKLVGRLAAQPVVDSDGVVIVDRNGEIDPAI
SAAIEKAAIATVMVRSPLTCEASRSVCRKCYGWALAHNELVDLGEAVGIIAAQSIGEPGT
QLTMRTFHTGGVSTAETGVVRSLVDGVVEFGPKARVRDHRTPHGVEAKLAETDFTLTLKP
SGKGKVQKIDITNGSILFVADGDPVAHDIILAQISSGSAVKKSVEKATKDVICDLAGQVR
FEDVIQPREVTDRQGNITHKAQRLGRLWVFSGDVYNLPPNALPVVETDKPVTTGDVLAES
RLQSEYGGAVRLRESTGDSREVQIVTASLTLKDCKLVGESSHTGESWHLEGKDNTRYLVK
TQPGTKIGAGEVIAELTDDRFRTQTGGMVKFAPGLSIKKARSAKHGFEVSKGGTLLWIPQ
ETHEINKDISLLMIEDGQWIEAGTEVVKDIFSQTAGIVTVTQKNDILREIIVRSGELHLV
SDAKVLARYGEDGKMVNPGEEIAPGLKAEAMKFVEKVDTPEGGALLLRPVEEYAIPDAAH
LPELSTVKQTGGPSLGLKATQRLTFKDGELIKSVEGVELLRTQLILETFDTTPQMTVDVE
AVADKRAKTIERLQLVILETLLVRRDTLSDASHGSTHTELQVEDGITVKRGDVVATTQIL
CKEDGVVQLPDPVPGEPIRRLIVERADDTRSLDLGAAVPTVAVGDRIVDGDVLADGVISP
CCGQVEAIDGQTLTIRLGRPYMVSPDSVLHVRDGELVQRGDGLALLVFERQKTGDIVQGL
PRIEELLEARRPRESAVLCRKSGTVQIKQGEDDDSITVSVIETDDVITEYPILLGRNVMV
SDGQQVSAGEMLTDGPINPHELLDCFFEDLRSRKPTMEAAQEAISKLQFRMVTEVQNVYK
SQGVSISDKHIEVIVRQMTSKVRIEDAGDTTLLPGELIELRQVEQVNSAMGVTGGAPAEF
TPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTG
FGGFEEELRAEAGPHPDILEEEAAGYRRNQNLRPDYTVEMPAPAATAAVLDDPSEEDLEA
TRSRHGIEAAASGFAAFARPTAEEGLEEELIADPAALEGLQEEGLLSDD
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccacccccgccaagaagatcagcaagaagagcgccaaggccgccgccgacctc
gcggccgccaatgccgccgcggcagcggccgcctcggccctcagcaagcaggcgccgccg
ttccgcaaccggatcatcgacaagaaggcgctgcgcaacctggtgtcctgggcctacaag
caccacggcaccgcggccaccgcggcgatggccgacgagctgaaggacctgggcttccac
tacgccacccaggcggcggtctcgatctcggtcgacgacctgcgcatccccggtgataag
gccgtgctgctggaggaggccgaggagcagatcacggccaccgaggagcgctaccggctc
ggtgagatcaccgaggtggaacgccacaccaaggtgatcgacacctggaccgagaccaac
gagcggctggtggcagccgtgcgccgcaacttcaacgacaacgatccactcaactcggtg
tggatgatggccaactccggcgcccgggggaacatgtcccaggtgcgtcagctggtgggc
atgcgcggcctgatggccaacccccagggggagatcatcgacctgccgatccgcaccaac
ttccgtgaggggctcacggtcaccgagtacgtgatctcctcctacggcgcccgcaagggc
ctggtggacaccgccctgcgcaccgccgactccggctacctcacccgccgtctggtggat
gtggcccaggatgtgatcgtgcgggaagaggattgcggcacccaccgcttcatccccatc
aacgccgatgagcggggccgcttcggcaccaagctggtgggccgtctggcggcccagccc
gtcgtcgacagcgacggcgtcgtcatcgtcgaccgcaacggcgagatcgacccggcgatc
tcggccgccatcgagaaggcggcgatcgccaccgtgatggtgcgctcccccctcacctgc
gaggcctcccgttcggtctgccgcaagtgctacggctgggccctggcccacaacgaactg
gtcgacctcggcgaagccgtcggcatcatcgccgcccagtccatcggtgaaccgggcacc
cagctcaccatgcgcaccttccacaccggtggtgtgtccacggccgagaccggcgtggtg
cgctccctggtggatggggtggtggaattcgggcccaaggcccgcgtgcgcgaccaccgc
accccccatggcgttgaggccaagctggccgaaaccgatttcaccctcaccctcaagccc
tcgggcaagggcaaggtgcagaagatcgacatcaccaacggctcgatcctgttcgttgcc
gatggcgatcccgtcgcccacgacatcatcctggcccagatctcctcgggctcggcggtg
aagaagagcgtcgagaaggccacgaaggacgtcatctgcgacctggccggccaggtgcgc
tttgaggacgtgatccagccccgggaggtcaccgaccgccagggcaacatcacccacaag
gcccagcgcctcggccgcctctgggtgttcagcggtgacgtctacaacctgccgcccaac
gccctgcccgtcgtcgagaccgacaagccggtgaccaccggcgacgtgctggccgaaagc
cgcctgcagagcgaatacggcggcgccgtgcggctgcgggagtccaccggcgattcccgc
gaggtgcagatcgtcaccgccagcctcaccctcaaggactgcaagctggtgggcgaatcc
agccacaccggcgagagctggcacctggagggcaaggacaacacccgctacctggtcaag
acccagcccggcaccaagatcggcgctggagaggtgatcgccgaactcaccgacgaccgc
ttccgcacccagaccggcggcatggtgaagttcgcccccggcctctcgatcaagaaggcc
cgctccgccaagcacggcttcgaggtgagcaagggcggcaccctgctgtggatcccccag
gaaacccacgagatcaacaaggacatctccctgctgatgatcgaggacggccagtggatc
gaggccggcaccgaggtggtcaaggacatcttcagccagaccgctggcatcgtcaccgtc
acccagaagaacgacatcctgcgggagatcatcgtgcgctccggtgagctgcacctggtc
tccgacgccaaggtgctggcccgctatggcgaggacggaaagatggtcaatcccggcgag
gagatcgcccccggcctcaaggccgaggcgatgaagttcgtcgagaaggtggacaccccc
gagggcggcgccctgctgctgcggcccgttgaggagtacgccatccccgatgccgcccac
ctgcccgaactgtccacggtcaagcagaccggcggtccgtccctcggcctcaaggccacc
cagcgcctcaccttcaaggacggcgagctgatcaagtcggtggaaggggtggaactgctg
cgcacccagctgatcctggaaaccttcgacaccaccccccagatgacggtggatgtggag
gcggtggccgacaagcgggccaagaccatcgagcgcctgcagctggtgatcctggaaacc
ctgctggtccgccgcgataccctctccgacgccagccacggctccacccacaccgagctg
caggtggaggacggcatcaccgtcaagcggggcgacgtggtcgccaccacccagatcctc
tgcaaggaggacggggtggtgcagctgcccgatcccgtccccggcgaaccgatccgccgt
ctgatcgtcgagcgggccgacgatacccgcagcctggatctcggcgcggccgtcccgacg
gtggcggtgggcgatcgcatcgtcgacggtgatgtgctcgctgacggggtgatctccccc
tgctgcggccaggtggaggccatcgacggccagaccctcaccatccgcctcggccgtccc
tacatggtgtcgcccgattcggtgctccacgtccgcgacggcgaacttgtccagcgcggt
gatggcctggcgctgctggtgttcgagcgccagaagaccggcgacatcgtccagggtctg
ccccggatcgaggaactgctcgaggcccgccgcccgcgggaatcggcggtgctctgccgc
aagagcggcaccgtgcagatcaaacagggcgaggacgacgattcgatcaccgtgtcggtg
atcgagaccgacgatgtcatcaccgagtacccgatcctgctgggccgcaacgtgatggtc
tccgatggccagcaggtgagcgccggcgagatgctcaccgacggtcccatcaacccccac
gagctgctcgactgcttcttcgaggacctgcgcagccgcaagcccaccatggaggcggcc
caggaggcgatctccaagctgcagttccgcatggtgacggaggtgcagaacgtctacaaa
tcgcagggggtctcgatcagcgacaagcacatcgaggtgatcgtgcgccagatgaccagc
aaggtccgcatcgaggatgccggcgacaccacgctgctccccggtgagctgatcgagctg
cgtcaggtggagcaggtgaactccgccatgggcgtcaccggcggcgctcccgccgagttc
acccccgtgctgctgggcatcaccaaggcctcgctgaacaccgactcgttcatctcggcg
gcctccttccaggagaccacccgggtgctgaccgaagcggccatcgagggcaagagcgac
tggctgcggggcctcaaggagaacgtgatcatcggccgcctgatccccgccggcaccggt
ttcgggggcttcgaggaggagctgcgcgccgaggccggaccccacccggacatcctcgag
gaggaggccgccggctaccgccgcaaccagaacctgcgtcccgactacaccgtcgagatg
ccggctccggccgccaccgccgccgtgctggatgatccctccgaggaggatctggaggcc
acccgcagccgccacggcatcgaggcggccgccagcggcttcgctgccttcgcccgtccc
accgccgaggagggcctggaggaggagctgatcgccgatccggcggccctcgagggcctg
caggaggaggggctgctcagcgatgactga
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integrated database retrieval system
