Cupriavidus gilardii: CR3_0953
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Entry
CR3_0953 CDS
T04050
Symbol
recJ
Name
(GenBank) single-stranded DNA exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cgd
Cupriavidus gilardii
Pathway
cgd03410
Base excision repair
cgd03430
Mismatch repair
cgd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cgd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CR3_0953 (recJ)
03430 Mismatch repair
CR3_0953 (recJ)
03440 Homologous recombination
CR3_0953 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgd03400
]
CR3_0953 (recJ)
DNA repair and recombination proteins [BR:
cgd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CR3_0953 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CR3_0953 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CR3_0953 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
ALD90198
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All DBs
Position
1:complement(1132736..1134433)
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AA seq
565 aa
AA seq
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MTRIAIRPHQPDHASALAALGLHPTLARILSARGVTHARELATDLPELMAPQAMKGIDRA
AVYLADAIAARRRLLIVADYDCDGATACAVGVRGLRMLGAQVDYIVPNRFEYGYGLTPEI
VALAAQRNPDVIVTVDNGIASVDGVAAANARGIDVVVTDHHLPGDRLPDAAVIVNPNQPG
CGFPSKNLAGVGVMFYVLLALRAELRQRGVFTPASQPRLDTLLDLVALGTVADVVKLDTN
NRILVAQGLKRMRAGRMHAGVAALFRAAGREASRATTFDLGFGLGPRLNAAGRLADMSLG
IECLLSDDAERAWEIAQQLDAMNRERRDIEAGMQQEALQILERPLDGLDPSSRFTVSVFN
DTWHQGVIGIVASRLKEKFHRPTITFAPGDEATIKGSGRSIPGFHLRDALDLVSKRHPGL
LVKFGGHAMAAGLTLRAGDFERFMDAFEGIGREWLTDDHLARVIETDGEIEDHCFDPAFV
SLLEQQVWGQGFPPPTFCGEFDVLRQTVLKGKHLKLQLGRGKRQFDAIWFNHADTLGASA
MVAYRLDNNTFNGVTRVQMVIEHAQ
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgacccgcatcgcgatccgcccccaccagcccgaccacgccagcgccctcgccgcgctg
ggcctgcatccgacgctggcgcgcatcctgtcggcgcgcggcgtcacccatgcgcgcgag
ctggccaccgacctgcccgagctgatggcgccgcaggcgatgaagggcatcgaccgcgcc
gcagtctatctggccgacgcgatcgcggcccgccgccggctgctgatcgtcgccgattac
gactgcgacggcgccaccgcctgcgcggtcggcgtgcgcggtttgcggatgctcggcgcg
caggtcgactacatcgtgccgaaccgcttcgaatacggctacggcctgacgccggagatc
gtcgcgctggcggcgcagcgcaatcccgacgtgatcgtcaccgtcgacaacggcatcgcg
agcgtcgatggcgtggccgcggccaatgcgcgcggcatcgacgtggtcgtcaccgaccac
catctgccgggcgaccggctgcccgacgccgcggtgatcgtcaatccgaaccagccgggc
tgcggcttccccagcaagaacctggcaggcgtcggcgtgatgttctacgtgctgctggcg
ctgcgcgccgaactgcgccagcgcggcgtgttcacgccggccagccagccgcggctggac
acgctgctcgatctggtcgcgctcggtaccgtggccgacgtggtcaagctcgacaccaac
aaccgcatcctggtcgcgcagggcctgaagcgcatgcgcgcgggccgcatgcatgcgggc
gtggccgcgctgttccgcgcggccggacgcgaggccagccgcgccaccaccttcgatctc
ggcttcggcctggggccgcggctgaacgccgcgggacggctggcggacatgtcgctcggc
atcgaatgcctgctcagcgacgatgcggagcgcgcctgggagatcgcccagcagctcgat
gcgatgaaccgggagcggcgcgacatcgaggcgggcatgcagcaggaagcgctgcagatc
ctcgaacgtccgctggacgggctcgatccgtcgtcgcgctttaccgtcagcgtgttcaac
gacacctggcaccagggcgtgatcggcatcgtcgcgtcgcgcctgaaggagaaattccat
cggccgacgatcaccttcgcgccgggcgacgaggccacgatcaagggctcgggccgctcg
atcccgggctttcatctgcgcgatgcgctcgatctggtctccaagcgtcatcccggtctg
ctggtcaagttcggcggccatgcgatggcggccggcctgacgctgcgggccggcgacttc
gaacgcttcatggacgcgttcgagggcatcggccgcgaatggctgaccgacgatcacctg
gcccgcgtgatcgagaccgacggcgagatcgaggaccactgcttcgatccggccttcgtg
tcgctgctggagcagcaggtatggggccagggcttcccgccgccgaccttctgcggggag
ttcgacgtgctgcgccagaccgtgctcaagggcaagcatctgaagctgcagctcggacgc
ggcaagcgccagttcgacgcgatctggttcaaccacgccgacacgctgggcgccagcgcg
atggtcgcctaccggctcgacaacaacaccttcaacggcgtcacgcgcgtgcagatggtg
atcgagcacgcgcaatag
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