Cupriavidus gilardii: CR3_1685
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Entry
CR3_1685 CDS
T04050
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cgd
Cupriavidus gilardii
Pathway
cgd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CR3_1685 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgd03019
]
CR3_1685 (rnr)
03016 Transfer RNA biogenesis [BR:
cgd03016
]
CR3_1685 (rnr)
Enzymes [BR:
cgd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CR3_1685 (rnr)
Messenger RNA biogenesis [BR:
cgd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CR3_1685 (rnr)
Transfer RNA biogenesis [BR:
cgd03016
]
Prokaryotic type
tRNA degradation factors
CR3_1685 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
WHD_RNase_R
HTH_11
CSD
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
ALD90911
LinkDB
All DBs
Position
1:complement(2048651..2051299)
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AA seq
882 aa
AA seq
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MNQNNYPIPSREEILGVLRTSGSPLSAGDIAKALAVTRKEHDGFQKRLAAMERDGQIELN
RKGRYELAHQPNFVVGRVQGHRDGFGFLIRDDGEDDIFLPERELQKAMHNDRAQVRVIGY
DRRGRPEGQIVEIVERANRFVIGRLLSEGGVLVVAPEDKRISQDILIPPRAQGKAKVGQV
VSVEIVEYPDRYVQPVGRVVEVLGEIDDPGMEIEIAVRKYGVPHTFSPAALSEAAALPDE
VREADLDHRIDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRAKGWRLIVAIADVSHYVRP
GTPLDADALDRATSVYFPRRVIPMLPEKLSNGLCSLNPLVDRLCMVCDAVITAKGELKAY
QFYPAVMHSAARLTYNEVWAVLSNTKGPEAHKRAELVPHLQNLYELYQVLLKARRERGAI
DFDTTETYIVCNAQGKIEQILPRTRNDAHRLIEECMLTANVCAADFLERFKHPALYRIHA
GPSEEKLKALREFLRTSGLSLGGGDKPQASDYAEVMDKIKARPDAPMLQTMLLRSMQQAV
YSPDNIGHFGLAYEAYAHFTSPIRRYPDLLVHRAIKAVLAHTKYQPAFAPGTALNTAISP
KARRMQAKDEAARAEKMAGRARRNEAVWDELGLHCSANERRADEASRDVEAWLKCYFMRD
KLGNEFAGTVSAVTSFGIFVQLDELYVEGLVHVTELGSDYFEYDEARNELRGQRTGIRYR
LTDRVRVQVSRVDLDARKIDFRLVQEPSAKSLRARPTTEPAPHVPAAHALPARKKGRQLA
ALLGGTSKPEESFDETLDRVFEEQPVFEAVITPVKIRPEGGAAGATGKPSKRAAKPKPAG
AVARTGGRAGGKTAAKSTAKRAGKAAGKTARKTASKKATRTR
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
ttgaatcagaacaactatccgatcccgagtcgggaagaaatcctcggcgtcctgcgtacc
tccggttcgccactgtcggccggcgacatcgccaaggccctcgccgtcacgcgcaaggag
catgacggcttccagaaacggctggccgcgatggaacgcgacggccagatcgaactgaac
cgcaagggccgctacgagctcgcgcaccagcccaatttcgtggtcggccgcgtgcaaggc
caccgtgacggcttcggcttcctgatccgcgacgacggcgaggacgatatcttcctgccc
gagcgcgagctgcagaaggcgatgcacaacgatcgcgcgcaggtgcgcgtgatcggctac
gaccgccgcggccgccccgaagggcagatcgtcgagatcgtcgagcgcgccaaccgtttc
gtgatcggccgcctgctcagcgagggcggcgtgctggtggtggcgcccgaggacaagcgc
atcagccaggacatcctgatcccgccgcgcgcgcagggcaaggccaaggtcggccaggtc
gtcagcgtcgagatcgtcgaatatccggaccgctatgtgcagccggtcggccgcgtggtc
gaggtgctgggcgagatcgacgatcccggcatggagatcgagatcgcggtgcgcaagtac
ggcgtgccgcatacgttctcgccggccgcgctgagcgaggcggcggcgctgcccgacgag
gtgcgggaggccgacctggaccaccgcatcgacctgcgcgacgtgccgctggtgacgatc
gatggcgaggacgcgcgcgacttcgacgacgcggtctattgcgagccggtcaagatcggc
cgcgccaagggctggcgcctgatcgtcgcgatcgccgacgtctcgcactatgtgcgcccc
ggcacgccgctggacgccgatgcgctggaccgcgcgacctcggtctacttcccgcgccgc
gtgattccgatgctgccggagaagctgtcgaacggcctgtgctcgctgaacccgctggtc
gaccgcctgtgcatggtctgcgacgcggtgatcaccgccaagggcgagctcaaggcctat
cagttctatcccgccgtgatgcactcggccgcgcgcctgacctacaacgaggtctgggcg
gtgctgtccaacaccaagggtccggaggcccacaagcgcgccgagctggtgccgcatctg
cagaacctgtacgagctgtaccaggtcctgctgaaggcgcgccgcgagcgcggggcgatc
gacttcgacaccaccgagacctatatcgtctgcaatgcgcagggcaagatcgaacagatc
ctgccgcgcacgcgcaacgacgcgcaccggctgatcgaggaatgcatgctgaccgccaac
gtctgcgcggccgacttcctcgagcgcttcaagcatcccgcgctgtaccggatccatgcc
ggccccagcgaggaaaagctcaaggcgctgcgcgagttcctgaggacctcgggcctgtcg
ctgggcggcggcgacaagccgcaggcgtccgactacgccgaggtcatggacaagatcaag
gcgcgtcccgatgcgccgatgctgcagaccatgctgctgcgctcgatgcagcaggcggtc
tacagcccggacaacatcggccacttcgggctggcctacgaggcctacgcccacttcacc
agcccgatccggcgctatccggacctgctggtgcaccgggcgatcaaggcggtgctggcg
cataccaagtaccagccggcctttgccccgggcaccgcgctcaataccgcgatctcgccg
aaggcccgccgcatgcaggccaaggacgaggccgcgcgggccgagaagatggccggccgc
gcccgccgcaacgaagcggtgtgggacgagctcgggctgcactgctcggccaacgagcgg
cgcgccgacgaggcctcgcgcgatgtcgaggcctggctcaagtgctacttcatgcgcgac
aagctgggcaacgagttcgccggcacggtcagcgcggtgacctcgttcggcatcttcgtg
cagctcgacgagctgtatgtcgaaggactggtccacgtgaccgaactgggcagcgactac
ttcgagtacgacgaggcgcgcaacgagctgcgcggccagcgcaccggcatccgctaccgg
ctgaccgaccgcgtgcgcgtacaggtctcgcgcgtcgacctcgacgcccgcaagatcgac
ttcaggctggtgcaggagccgtcggccaagagcctgcgcgcgcgcccgaccaccgagccg
gcgccgcatgtgcccgcggcgcatgcactgccggcgcgcaagaagggccgccagctggct
gcgctgctgggcggcacctccaagccggaggagtcgttcgacgaaacgctggatcgcgtg
ttcgaggagcagcccgtgttcgaggcggtgatcacgccggtcaagatccggccagagggc
ggtgcggccggcgccaccggcaagccgtccaagcgggccgccaagcccaagccggccggc
gcggtagccaggacgggcggcagggcgggcggcaagaccgcggcgaagtcgaccgccaag
cgggccggcaaggccgccggcaagacggcccgcaagaccgcgtcgaagaaggccacgcgg
acgcggtaa
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