Cupriavidus gilardii: CR3_1944
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Entry
CR3_1944 CDS
T04050
Symbol
srmB
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cgd
Cupriavidus gilardii
Pathway
cgd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CR3_1944 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgd03019
]
CR3_1944 (srmB)
Enzymes [BR:
cgd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CR3_1944 (srmB)
Messenger RNA biogenesis [BR:
cgd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CR3_1944 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Fe-ADH
AAA_22
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ALD91156
LinkDB
All DBs
Position
1:complement(2360791..2362296)
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AA seq
501 aa
AA seq
DB search
MTTTTNTNTSAVPTPTDITFDSFGLDPRVLRALSEQGYTKPTPIQAQAIPVVLLGKDVMG
AAQTGTGKTAGFALPIIQRLLPLANASASPARHPVRALMLTPTRELADQVYDNVARYARH
TDLRSTVVFGGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRM
LDMGFLPDLQRIINLLPAKRQTLLFSATFSPEIKKLAASYLHQPVTIEVARSNSANENVR
QTVYQVQDGQKQEAVVHLLKQRADQGLSRQCIVFVNSKIGCSRLARHLEREGINAAAIHG
DKTQTERMQTLEGFKQGTIDALVATDVAARGLDIADMPCVINFDLPFNAEDYVHRIGRTG
RAGATGDALSIFVPGDERLLADIEKMLKRQIPRAQLEGFDPSAARFRAADDDRRRGRSNE
PRRPRADSEDRPRKADHGNARNAFRASDDPFFSRPYEPSPSASSASSTSSEATLDPRQVG
LARARPKRPVAALLGGVPRKS
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccaccacgaacacgaacacctctgccgtaccgactcccaccgacatcaccttc
gacagcttcgggctggacccgcgcgtgctgcgcgcgctgtccgagcagggctataccaag
ccgaccccgatccaggcgcaggcaatcccggtggtgctgctgggcaaggacgtgatgggc
gccgcgcagaccggcaccggcaagaccgcgggcttcgcgctgccgatcatccagcgcctg
ctgccgctggccaacgcgagcgcctcgccggcgcggcacccggtgcgcgcgctgatgctg
acgccgacgcgcgaactggccgatcaggtctacgacaacgtggcccgctacgcgcgccac
accgacctgcgcagcaccgtggtgttcggcggcgtcgacatgaacccgcagaccgacgcg
ctgcggcgcggcgtcgagatcctggtcgcgaccccgggccgcctgctcgaccacgtgcag
cagaaatcggtcaacctgtcgcaggtgcagatgctggtgctggacgaggccgaccgcatg
ctggacatgggcttcctgccggacctgcagcgcatcatcaacctgctgccggccaagcgg
cagacgctgctgttctcggcaaccttctcgcccgagatcaagaagctggcggccagctat
ctgcaccagccggtgacgatcgaagtggcgcgcagcaactcggccaacgagaacgtgcgc
cagaccgtgtaccaggtgcaggacggccagaagcaggaggccgtggtgcatctgctgaag
cagcgcgccgaccagggcctgtcgcgccagtgcatcgtcttcgtcaacagcaagatcggc
tgctcgcggctcgcccgccatctggagcgcgagggcatcaacgccgccgcgatccacggc
gacaagacccagaccgaacggatgcagacgctggaaggcttcaagcagggcaccatcgac
gcgctggtggccaccgacgtcgccgcgcgcggcctggacatcgccgacatgccctgcgtg
atcaacttcgatctgccgttcaatgccgaggactacgtgcaccggatcggccgtaccggc
cgcgccggcgccaccggcgatgcgctgtcgatcttcgtgccgggcgacgagcggctgctg
gccgatatcgagaagatgctgaagcggcagattccgcgcgcacagctcgaaggcttcgat
ccgtcggcagcgcgcttccgtgccgccgacgacgatcgccgccgcggccgctcgaacgag
ccgcgccgcccgcgcgccgacagcgaggaccgtccgcgcaaggccgaccacggcaatgcg
cgcaatgccttccgggcctcggacgatccgttcttctcgcggccctatgaacccagcccg
agcgcgtcgtcggcgtcgtcgacttccagcgaggcgacgctcgatccgcgtcaggtcggt
ctggcgcgcgcgcggccgaagcgtccggtcgccgcgctgctcggcggcgtaccgcgcaag
tcctga
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