Cupriavidus gilardii: CR3_1956
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Entry
CR3_1956 CDS
T04050
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cgd
Cupriavidus gilardii
Pathway
cgd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cgd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CR3_1956 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgd03021
]
CR3_1956 (rpoD)
Transcription machinery [BR:
cgd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CR3_1956 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
Med3
Motif
Other DBs
NCBI-ProteinID:
ALD91167
LinkDB
All DBs
Position
1:complement(2375316..2377568)
Genome browser
AA seq
750 aa
AA seq
DB search
MAKQQNTEVESKRTAAAGAKTASAKSGATAAASKARAATTAPVASQRPAAAAAPEPKKRG
RKPKAEMLQDDSHTDDVNDELYEDDTRAAAPAAAPKTEKQKAKDRKAKEKALLKEFASAQ
QGTEEELEARRQKLKALIKLGKSRGYLTYAEINDHLPDDMVDSETIDTLVATLNDIGIAV
YEQAPDAETLLLNDNAPSATSEEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELL
TREGEIEIAKRIEAGLKDMVMAISACPVTISEILAHAERVANDEIKIDEFVDGLIDPNAE
EAVEEVGVTPAAAAASDDEELESDDEEADEDEDDDAAGGGASARQLEELKVAALEKFRVI
ADQFDKMRRAFEKEGYKSKPYIKAQEAIQNELMGIRFTARNVERLCDTLRGQVDEVRKLE
RAILNIVVDKCGMPRADFVARFPGNETNLDWIHTVVADNKPYSPIVERNVPAVHELQQKL
IDLQARVVLPLKELKEVNRKMSEGEKRAREAKREMTEANLRLVISIAKKYTNRGLQFLDL
IQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMN
RISRQILQETGNEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIE
DTNTLAPAEAALHGSMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTR
ERIRQIEAKALRKLRHPSRSDKLKSFLEGS
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
gtggcgaaacagcagaacaccgaagtcgagagcaagcgaacggcagccgccggcgccaag
accgccagcgccaagtccggcgccaccgcggcggcgtccaaggcgcgcgccgccaccacc
gcacccgtagcatcccagcgtcccgctgcggccgccgccccggagccgaagaagcgcggc
cgcaagcccaaggccgagatgctgcaagacgacagccatactgacgacgtgaacgacgag
ctttacgaagacgacacgcgtgccgccgcgccggcggccgctccgaagaccgagaagcag
aaggccaaggaccgcaaggccaaggaaaaggcgctgctcaaggagttcgcctcggcccag
cagggcaccgaggaagagctcgaggcgcgccgccagaagctcaaggcgctgatcaagctg
ggcaagtcgcgcggctacctgacctacgccgagatcaacgatcacctgccggacgacatg
gtcgattcggaaacgatcgacacgctggtcgcgacgctcaacgacatcggcatcgccgtc
tacgagcaggcgcccgacgccgagacgctgctgctcaacgacaatgccccgtcggccacc
agcgaggaagaggccgaggaagaggccgaagccgcgctgtcgacggtcgactccgaattc
ggccgcaccaccgacccggtccgcatgtacatgcgcgagatgggtaccgtcgagctgctg
acccgcgaaggcgagatcgagatcgccaagcggatcgaggccggcctgaaggacatggtg
atggcgatctcggcctgcccggtcacgatctccgagattctggcgcacgccgagcgcgtc
gccaatgacgagatcaagatcgacgagttcgtcgacggcctgatcgatccgaatgccgag
gaagcggtcgaggaagtcggcgtgacgccggcggccgccgctgcctcggacgacgaggaa
ctggaatcggacgacgaggaagccgacgaggacgaggacgacgacgccgccggcggcggt
gcctcggcacgccagctggaagagctcaaggtcgccgcgctggagaaattccgcgtgatc
gccgaccagttcgacaagatgcgccgcgccttcgagaaggaaggctacaagtccaagcct
tacatcaaggcgcaggaagcgatccagaacgaactgatgggcatccgcttcaccgcccgc
aacgtcgagcgcctgtgcgacacgctgcgtggccaggtcgacgaagtgcgcaaactggaa
cgcgcgatcctgaacatcgtggtcgacaagtgcggcatgccgcgcgccgacttcgtggcc
cggttcccgggcaacgagaccaacctggactggatccacacggtcgtcgccgacaacaag
ccgtatagcccgatcgtcgagcgcaacgtgccggccgtgcacgaactgcagcagaagctg
atcgacctgcaggcgcgcgtggtgctgccgctgaaggaactgaaggaagtcaaccgcaag
atgtccgagggcgagaagcgcgcccgcgaggccaagcgcgagatgaccgaggccaacctg
cgtctggtgatctcgatcgccaagaagtacaccaaccgcggcctgcagttcctcgacctg
atccaggaaggcaacatcggcctgatgaaggcggtggacaagttcgaatatcgccgcggc
tacaagttctcgacctacgcgacctggtggatccgtcaggccatcacgcgttcgatcgcc
gatcaggcgcgcaccatccgtatcccggtgcacatgatcgagacgatcaacaagatgaac
cgcatctcgcgccagatcctgcaggaaaccggcaacgagccggatccagcgacgctggcc
gagaagatggagatgcccgaggacaagatccgcaagatcatgaagatcgccaaggagccg
atctcgatggaaacgccgatcggcgacgacgacgactcccatctgggcgacttcatcgag
gacaccaacacgctggcgcccgccgaggccgcgctgcacggctcgatgcgagacgtggtc
aaggacgtgctcgactcgctgacgccgcgcgaagccaaggtgctgcgcatgcgcttcggc
atcgaaatgagcaccgaccacacgctggaagaggtcggcaagcagttcgatgtcacccgt
gaacggatccgccagatcgaggccaaggcactgcgcaagctgcgccacccgagccgctcc
gacaagctgaagagcttcctggaaggcagctga
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