Cricetulus griseus (Chinese hamster): 100752504
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Entry
100752504 CDS
T02813
Name
(RefSeq) LOW QUALITY PROTEIN: spliceosome RNA helicase DDX39B isoform X2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cge
Cricetulus griseus (Chinese hamster)
Pathway
cge03013
Nucleocytoplasmic transport
cge03015
mRNA surveillance pathway
cge03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cge00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100752504
09122 Translation
03013 Nucleocytoplasmic transport
100752504
03015 mRNA surveillance pathway
100752504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cge03019
]
100752504
03041 Spliceosome [BR:
cge03041
]
100752504
Enzymes [BR:
cge01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100752504
Messenger RNA biogenesis [BR:
cge03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100752504
Spliceosome [BR:
cge03041
]
Complex C
Other components
EJC/TREX
100752504
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100752504
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
100752504
NCBI-ProteinID:
XP_035307140
UniProt:
A0A9J7HBH6
LinkDB
All DBs
Position
1
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AA seq
343 aa
AA seq
DB search
MDVLCQAKSGMGKTVVFVLATLQQLEPITGQVSVLVMCHTRELAFQISKEYERFSKYMPN
VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML
EQLDMRRDVQEXFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGL
QQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSMQRCIALAQLLVEQNFPAIAIHRSMP
QEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGTKC
LAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcctgtgccaggccaagtcaggcatggggaagacagtagtgtttgtcctggcc
acactgcagcagctggagccaatcactgggcaggtgtctgtgctggtgatgtgtcacact
agggagttggcttttcagatcagcaaggaatacgagcgcttctcaaagtacatgccgaat
gtcaaggtggcagtgttttttggcggtctgtctatcaagaaggatgaagaggtgctgaag
aagaactgcccacacatcgtggtggggactcctggccgaattctagccctggctcgaaat
aagagcctgaacctcaagcacattaaacactttatcttggacgaatgtgacaagatgctt
gaacagctcgacatgcgtcgggatgtccaggaanattttcgcatgaccccccatgagaag
caggtcatgatgttcagtgctaccttgagcaaagagatccggccagtctgccgcaagttc
atgcaagatcctatggagatcttcgtggatgatgagaccaagttgacgctgcacgggttg
cagcaatactacgtgaaactgaaggacaacgagaagaaccggaagctctttgaccttctc
gatgtccttgagttcaaccaggtggtgatctttgtgaagtccatgcagcggtgcatcgcc
ctggcccagcttctggtggagcagaacttccccgccattgctatccaccgcagcatgccc
caggaggagaggctctctcggtatcagcagttcaaggatttccagcggaggattcttgtg
gccaccaacctgtttggtcgaggcatggacattgagcgtgtgaacatcgccttcaactat
gacatgccagaggattcggacacctacctgcaccgggtggccagagcaggcaccaagtgc
ttggccatcacatttgtgtcagatgagaacgatgctaagatcctcaatgacgtgcaggac
cgctttgaggtcaacatcagtgagctccccgatgagatcgacatctcctcctacattgaa
cagacacggtag
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