Cricetulus griseus (Chinese hamster): 100752804
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Entry
100752804 CDS
T02813
Symbol
Patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X3
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cge
Cricetulus griseus (Chinese hamster)
Pathway
cge03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cge00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100752804 (Patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cge03019
]
100752804 (Patl1)
Messenger RNA biogenesis [BR:
cge03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100752804 (Patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
100752804 (Patl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
100752804
NCBI-ProteinID:
XP_027262439
UniProt:
A0A8C2QQ61
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All DBs
Position
3:complement(48664859..48696767)
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AA seq
770 aa
AA seq
DB search
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PAAADEQTGNRERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPEPRS
LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSP
VIGSPPVRAVPIGTPPKQMAVPSFNQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSV
PNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKL
LQGRVGQILPPAPGFRAFFSAPPPATPPPQQHPPGPGPHLQNLRPQAPMFRPDTTHLHPQ
HRRLLHQRQQQSRNQHRNLNGAGDRGSHRANHQDHLRKDPYANLMLQREKDWVSKIQMMQ
LQSTDPYLDDFYYQNYFEKLEKMSAAEEIQGDGPKKERTKLITPQVAKLEHAYKPVQFEG
SLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYE
RRYLLSLEEERPALVDERKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARI
LPFLSTEQAADILMATARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVTVTSLLQQLM
NLPQSATAPAPSNPHLTAVLQNKFGLSLLLILLSRGEDLQSSDPAIESTQNNQWTEVMFM
ATRELLQIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctacgagtctttagaggattgtcctctagatgaagatgaagatgcatttcaa
ggcctgggagaagaagatgaagaaattgatcaattcaatgatgatacatttgggtcaggt
gcagttgatgatgattggcaggaagcacatgagcgcctggctgagttggaagagaagcta
cctgcggcagctgatgagcaaacaggcaatagagagagggatgagatggacttgttgggt
gaccatgaggagaatctagcagaaaggctcagtaagatggtgattgaaaatgagctagaa
gatccagctatcatgagggcagtgcagaccaggccggttttacaacctgaacccagaagt
ctgaattctagcatctgggatggatctgaagttctgaggcgaatccgtggaccactactt
gctcaggaaatgcctacggtgtctgtattagaatatgccttgcctcagaggcccccacag
ggcccagaagatgatcgagacctttctgagcgagctttaccaaggcgttctacatcacct
gtcattggaagtcctcctgttagagccgttcctataggcaccccacctaagcagatggcc
gttcccagcttcaaccaacagattctgtgtccgaagcctgttcatgtacgacctccgatg
ccaccacgttatcctgctccctatggtgagaggatgtctccaaaccagctctgcagtgtc
ccgaattcgtcccttctgggccacccttttcctcctagtgttcctcctgtactcagtccc
ctgcagagagcacagcttcttggaggagcacagctacagcctggtcgtatgtctcccagc
cagtttgcacgagtccctggatttgttggtagccccctggctgccatgaatcctaagttg
ctacaagggcgagttggacagatacttcccccagcaccaggcttccgtgccttctttagt
gctccaccccctgctacaccccctccccaacagcatcctcctggcccaggacctcacctg
caaaacttaagacctcaggccccaatgtttagaccagacacaactcaccttcatccacag
caccggcgcctgttgcatcagaggcagcagcagagtagaaatcagcatcggaatctcaat
ggtgctggagacagaggaagtcaccgggccaatcatcaagatcatctccggaaggatcca
tatgctaatctcatgctgcagcgggaaaaggattgggtttctaaaatccagatgatgcag
ttgcagagcactgatccctacctggatgatttctattaccagaattactttgaaaaactg
gagaaaatgtcagctgctgaagaaatacaaggtgatggtcctaagaaggagcgtaccaag
ctcatcaccccccaggtggccaaactggagcatgcttataagcctgtgcagtttgagggc
tctttgggtaagcttactgtctctagtgtgaacaatcctcgaaaaatgattgatgctgtt
gtgacatctcggagtgaggatgacgaaacaaaagaaaaacaagttcgggacaagagaaga
aaaacccttgtcataattgagaaaacctatagtttactccttgatgtggaggattatgaa
aggcgctatctcctaagtctagaagaagagcggcctgccctggtggatgaaagaaagcac
aaaatctgtagcatgtatgacaacctgaggggcaaattgcctggacaagaaaggccaagc
gatgaccactttgtacagatcatgtgtatccgaaaagggaagagaatggttgcccgcatt
ctccctttcctctccacagagcaagcagctgacattcttatggcaactgccaggaacctc
cctttccttatcaagaaggacgcacaagatgaggtgctgccatgcttactgagtcccttc
tctcttctcctctatcatcttccttcagtgactgtcaccagccttctgcaacagctaatg
aacctacctcaaagtgcaactgcaccagcaccctccaatcctcacctcactgctgtgctc
cagaacaagtttggcttgtcactgctcctaatccttctaagccgtggagaagacctacag
agttcagatcctgctatagaatcaacgcaaaataaccaatggacggaggtgatgttcatg
gcaacccgagaacttctacagatcccccaagcagccctggctaagccaatctctataccc
acaaatctagtgtcccttttttctcgctatgttgaccggcagaaactgaacttgctggag
acaaaactacagctggttcaggggatacgataa
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