Cricetulus griseus (Chinese hamster): 100753347
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Entry
100753347 CDS
T02813
Symbol
Pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X3
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cge
Cricetulus griseus (Chinese hamster)
Pathway
cge03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cge00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100753347 (Pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cge03021
]
100753347 (Pcf11)
03019 Messenger RNA biogenesis [BR:
cge03019
]
100753347 (Pcf11)
Transcription machinery [BR:
cge03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100753347 (Pcf11)
Messenger RNA biogenesis [BR:
cge03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100753347 (Pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
100753347
NCBI-ProteinID:
XP_027263451
UniProt:
A0A9J7FLI7
LinkDB
All DBs
Position
3:106440920..106466163
Genome browser
AA seq
1684 aa
AA seq
DB search
MSEQTPAEAVAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETANLGPGSAPSKLHVSQIPAMAVKTPHQVPVQPDKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKEQSHRKEFVMNTLNQSDIKTSKTVPSEKLNSSKQEKSKSSERITKKELDQ
LDSKSKSKSKSPSPLKNKLSHPKDLKNQESESMRLSDMNKRDPRLKKHLQDKAEGKDEDV
KEKRKTAEKKDKDEHMKSSEHRLIGSRSKIINGIVQKQDMVTEELEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTLAPKAGKMRQSGLKQSHMEEFPPPSR
EERNVKRSTKQDVRDPRRLKKMDEERPQETSSQHSMKSGAEPKENIENWQSSKSAKRWKS
GWEENKSLQQGDEHSKPPHLRHRESWSSTKGILSPRTPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDGPASRFAGLDTNQRLTALAEDRPLFDGPGRPSVTRDGPGKMI
FEGPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPMRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQGGGGGFRFEGSPSMRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGL
RFDGPHGQPVGSLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQ
QGVGMRFEGPHSQSVAGLRFEGHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEG
PVPGGGLRIEGPLGQGGPRFEGCHSLRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGP
QRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQT
APYNDPPGNAFNVPSQGLQFQRHEQIFDTPQGPNFNGPHGPGNQNFPNPLNRASGHYFDE
KNLQSSQFGNFGNLPTPMSVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFIQNP
SGGLPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEAVAQPPPEEEEDQNE
DQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRT
EKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQS
VPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCT
PSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEEQIDAPPACSEESVATPTEIKTENDT
VESV
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccgtggctgcgggggcccgggaggacgcctgtcgg
gattatcaatcgtcgctggaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccatcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatattccctttgaagaaactttatgccttggatgtcagagtcaattca
ttagatcctgcttggcctattaaacctctgccccctaatgtgaatacatctagcatccat
gtgaatcccaaatttttaaataaatcgcccgaggagccttcaacacctggcacagtggtc
agttcccccagtatctcaactcctccgattgtacctgatatacaaaagaatcttacccaa
gaacaactaataaggcagcagttacttgcaaaacaaaaacagttgttagaacttcagcag
aaaaagctggagcttgagttagaacaagctaaggcacaactggcagtatctcttagtgtt
cagcaggagaccgccaacttgggtcctggatcagcaccatctaaattacatgtttcacaa
attcctgctatggcggttaaaactccccatcaggttcctgtgcaacctgacaaaagccga
ccgggtccatctttacaaatccaggacttgaaaggaactaatcgggatccccgtcttaac
aggatgagccaacattcttctcatggcaaagagcagagtcataggaaggaatttgtaatg
aacacattaaaccagtctgatattaaaacaagtaaaactgtaccctctgaaaaactaaat
tcatccaagcaagaaaaaagtaaatcaagtgaaagaataaccaagaaagaacttgaccag
ttagattctaaatctaaatctaaatctaaatcaccatcacctttgaaaaacaaattatcc
cacccaaaagacttgaaaaatcaagaatctgaaagtatgaggttgtctgatatgaacaag
agagatccacgtttaaaaaagcatcttcaggataaagctgaaggcaaagatgaagatgta
aaagaaaagagaaaaactgcagaaaagaaggataaagatgaacacatgaaatcatctgaa
cacagactgattggaagtagaagtaaaatcataaatggcattgtccagaaacaggacatg
gtaacagaagaattggaaaaacaggggacaaaaccagggagatcaagtactcgaaagaga
tcaagatcgaggtcaccgaagtctcggtcaccaattatacattccccaaagagaagagat
agacggtcacctaaacgaaggcaaagaagtatgtctccaactttggcccccaaagctgga
aagatgcgccagtcaggacttaaacagtcacatatggaagagttcccaccaccttccagg
gaagaaagaaatgttaagagaagtactaagcaggatgttcgagatccccgaagactgaaa
aagatggatgaggaacggccacaagaaacttctagtcaacattctatgaagtcaggcgca
gaaccaaaggagaatatagagaattggcaaagctccaagtctgctaaaagatggaaatct
ggttgggaagaaaataaaagcttacaacagggtgatgaacatagtaaacctcctcatcta
aggcatagggaaagctggtcaagcactaaaggaatattgtcacctcgaaccccaaagcag
caacatcgattaagtgtagatgccaatcttcagattcctaaagagttaacccttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcttctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtacgagaggagcagagatctccattcaatgat
cgttttccacttaagcgacctagatatgaagattcagataaaccatttgtagacggccca
gcctcaagatttgctggccttgatacaaatcagcggcttacagctttagctgaagaccga
ccattatttgatggacctggtaggccatctgtgacaagagatggcccaggcaagatgatt
tttgaaggacctaataaattaagccctagaattgatggacctcctacaccaggttctctt
cggtttgatgggtcaccaggacaaatggggggaggaggccctatgagatttgaaggacca
caaggtcagttaggaggtgggtgccctttgagatttgaaggtcctccaggaccagtagga
acacctctcaggtttgaagggccaattggtcaaggaggaggaggtggttttcgatttgaa
ggttcacctagtatgaggtttgagggatctgcaggtggtttgcgatttgaaggaccaggg
ggtcagcctgtgggtggtctcaggtttgaaggacatcgtggtcaacctgtgggtggtctg
aggtttgatggacctcatggacagcctgtgggaagtcttagatttgataaccctcgaggt
cagcctgtaggtggacttagatttgaggggggtcatggtccatcaggggctgcaattagg
tttgatgggcctcatggtcagccaggtggtggtatcagatttgagggccctttgctacag
caaggagttggaatgaggtttgagggtccccacagtcagtctgtagctggtctgagattt
gaaggacataatcaactaggtgggaaccttaggtttgagggaccacatggtcaaccaggg
gttgggatcaggtttgaaggacctttagttcaacaaggaggtggaatgaggtttgagggt
cctgtaccaggaggtggcctgagaattgaagggcctctgggtcaaggtggtcctagattt
gaaggttgtcattctttaaggtttgatggacagccaggtcagccatcactcttgccaaga
tttgatggattacatggccagccaggtcctcgatttgaaagaactggtcagccaggtcca
cagagatttgatgggccacctggacagcaggttcaaccaaggtttgatggtgtacctcaa
agatttgatgggccacaacaccagcaagcatcaagatttgatattcctcttggtctgcaa
ggcaccagatttgacaatcatccttcacaaaggcttgaatcggtatctttcaatcagact
gccccatataatgatccacctggcaatgcttttaatgttccatctcaaggactacagttc
cagagacacgaacaaatatttgatacacctcaaggaccaaattttaatggacctcatggc
cctggaaaccagaatttcccaaatccccttaacagagcttcaggacactattttgatgaa
aagaatcttcagagttctcagtttggaaactttggcaatttacctactccaatgtcagta
ggaaacattcaggcatctcaacaggttctgactggtgttgctcagccagtagcatttggc
caaggacaacaatttttaccagttcatccacagaatcctggagcttttattcaaaatcct
tcaggaggtcttcctaaggcatatcctgataatcatctcagtcaggtggatgtaaatgaa
ttgttttcaaaactgctaaaaacaggaattctcaaattgtcacagcctgattcagctaca
acacaggtaaatgaggctgttgctcagcctccccctgaagaagaggaggatcagaatgaa
gatcaagatgttccagatcttactaattttacaattgaagaattgaagcaacgttatgac
agtgttataaaccggctgtatactgggattcagtgttactcttgtggaatgaggtttaca
acatcccagacagatgtttatgcagatcacttggactggcattatcggcaaaatagaact
gagaaagatgttagcagaaaagtcactcatagacgttggtactacagtttaacagactgg
atagaatttgaagaaatagctgatttggaagaacgtgcaaaaagccagttttttgaaaag
gttcatgaagaggttgtcctcaaaactcaggaggctgctaaagaaaaggagttccaaagt
gtacctgctggaccagctggagcagttgagagttgtgaaatctgtcaagaacaatttgaa
cagtactgggatgaagaggaggaggaatggcacttaaaaaatgctattagagtagacgga
aagatttaccatccatcgtgttatgaagattatcaaaatacatcttcttttgattgtaca
ccatctcccagcaagacaccagttgaaaaccctttgaacattatgttgaacattgtcaaa
aacgaattgcaagaaccctgtgaaagtcccaaagttaaggaagagcaaattgatgcccca
ccagcttgttcggaagaaagtgtagcaacacccactgaaattaaaacagaaaatgataca
gttgagtcagtttaa
DBGET
integrated database retrieval system
