Cricetulus griseus (Chinese hamster): 100753589
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Entry
100753589 CDS
T02813
Symbol
Col3a1
Name
(RefSeq) collagen alpha-1(III) chain isoform X3
KO
K19720
collagen type III alpha
Organism
cge
Cricetulus griseus (Chinese hamster)
Pathway
cge04611
Platelet activation
cge04820
Cytoskeleton in muscle cells
cge04926
Relaxin signaling pathway
cge04933
AGE-RAGE signaling pathway in diabetic complications
cge04974
Protein digestion and absorption
cge05146
Amoebiasis
cge05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
cge00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100753589 (Col3a1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
100753589 (Col3a1)
09152 Endocrine system
04926 Relaxin signaling pathway
100753589 (Col3a1)
09154 Digestive system
04974 Protein digestion and absorption
100753589 (Col3a1)
09160 Human Diseases
09174 Infectious disease: parasitic
05146 Amoebiasis
100753589 (Col3a1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
100753589 (Col3a1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100753589 (Col3a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cge00536
]
100753589 (Col3a1)
Glycosaminoglycan binding proteins [BR:
cge00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100753589 (Col3a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
100753589
NCBI-ProteinID:
XP_027252619
UniProt:
A0A9J7JA96
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Position
2:401902840..401938101
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AA seq
1466 aa
AA seq
DB search
MMSFVQSGTWLLLALLHPTFIWAQQSSVDESGCSHLGQSYESRDVWKPEPCQICVCDSGS
VLCDDIICDEDPLDCPNPEIPFGECCAICPQPSTAAPVPPDGHGPQGPKGDPGPPGIPGR
NGDPGLPGQPGLPGPPGSPGICESCPTSGQNYSPQYDSYDVKSGVGAGGLGGGYPGPAGP
PGPPGPPGSVGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGR
PGERGLPGPPGIKGPSGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGDNGAPGP
MGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGS
PGSNGSPGQRGEPGPQGHAGAQGPPGPPGNNGSPGGKGEMGPAGIPGAPGLMGARGPPGP
AGTNGAPGQRGPSGEPGKNGAKGEPGARGERGEAGSPGIPGPKGEDGKDGSPGEPGANGL
PGTAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGVAGEPGRDGNPGGPGMRGV
PGSPGGPGNDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGG
PGGPGLPGPAGKNGETGPQGPPGPTGPSGDKGESGPPGPQGLQGIPGTSGPPGENGKPGE
PGPKGEVGAPGVPGGKGDAGAPGERGPPGTAGAPGLRGGAGPPGPEGGKGPAGPPGPPGT
SGSPGLQGMPGERGGPGSPGPKGEKGEPGGAGADGAPGKDGPRGPTGPIGPPGPAGQPGD
KGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGP
PGPAGLPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGGRGLPGPPGNNGNPGPPGPSGA
PGKDGPPGPAGNSGSPGNPGVAGPKGDAGQPGEKGPPGAQGPPGSPGPLGIAGLTGARGL
AGPPGMPGPRGSPGPQGIKGESGKPGASGHNGERGPPGPQGLPGQPGTAGEPGRDGNPGS
DGQPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGETGPAGPSGAPGP
AGSRGPPGPQGPRGDKGETGERGSNGIKGHRGFPGNPGPPGSPGAAGHQGAVGSPGPAGP
RGPVGPHGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCG
GGAAALGGGGEKSGGFSPYYGDEPMDFKINTEEIMSSLKSVNGQIESLISPDGSRKNPAR
NCRDLKFCHPDLKSGEYWVDPNQGCKMDAIKVFCNMETGETCINASPMTVPRKNWWTDAS
AEKKHVWFGESMNGGFQFSYGNPDLPEDVLDVQLAYLRLLSSRASQNITYHCKNSIAYMD
QASGNVKKSLKLMGSNEGEFKAEGNSKFTYTVLEDGCAKHTGEWSKTVFEYRTRKALRLP
IIDIAPYDIGGPDQEFGVDIGPVCFL
NT seq
4401 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctttgtgcaaagtgggacttggcttcttctcgccctgcttcatcctactttc
atttgggcacagcagtccagtgtagacgaatcgggatgcagccaccttggtcagtcctat
gagtccagggatgtttggaagccagaaccatgtcaaatatgtgtctgtgactccggatct
gtcctctgcgatgacataatatgtgatgaggatccactagactgccccaacccagagatc
ccatttggagaatgttgtgcaatatgcccacagccttcaacagctgctcctgtacctcct
gatggtcacggacctcaaggccccaaaggagatccagggcctcctggcattcctgggaga
aatggtgatcctggccttccagggcaaccaggtctccctggacctcctggctctcctgga
atctgtgaatcatgtccaactagtggtcagaattattctccccagtatgactcatacgat
gtcaagtctggagtaggagcaggaggacttggtggtggctatcctggtccagctggtccc
ccaggccctcctggtccccctggctcagttggacatcctggctcccctggttctcctgga
taccaaggtccccctggtgaacctggtcaagctggtccttcaggccccccaggacctcct
ggtgctattggtccatctggtcctgctggaaaggatggagagtcaggaagaccgggacga
cctggagaacgtggactgcctggtcctccaggtatcaaaggcccaagtggcatgcctgga
ttccctggtatgaaaggacacagaggttttgatggacgaaacggagaaaagggtgaaacc
ggtgctcctggattgaagggtgaaaacggtctcccaggtgacaatggagctcctggcccc
atgggtcccagaggggctcctggtgagagaggacggccaggccttcctggagctgcaggt
gctcgaggcaatgatggtgctcggggcagtgatggccaaccaggtccccctggtcctcct
ggaaccgcaggattccctggatcccctggtgctaagggtgaagttgggcctgcagggtcc
cctggctcaaatggctctccaggacaaagaggggaacctggaccacagggacacgctggt
gctcaggggcctcctggccctcccgggaataatggcagtcctggtggcaaaggtgaaatg
ggtcctgctggcattcctggagctcctggactaatgggagctaggggtccccctggacca
gctggcactaatggtgcacccgggcaacgaggtccttcaggtgaacccggcaagaatggt
gccaaaggagagccaggagctcgtggtgaacggggggaagctggttccccaggaatccca
gggcctaagggtgaagatggcaaagatggatcacctggagaacctggtgcaaatggactt
ccaggaactgctggagaaaggggtgctcctggcttccgaggacctgcagggccaaatggc
atcccaggagaaaagggtcctgctggggagcgtggtgccccaggtcctgcagggccccga
ggagtggctggagaacctggccgagatggaaacccaggaggcccaggaatgaggggtgtg
cccggaagcccaggaggaccaggcaatgatgggaaaccaggacctcccggaagtcaagga
gaaagtgggcgccctggtcctcctggcccatctggcccccggggtcagcctggtgtcatg
ggtttccctggtcctaaaggaaatgatggtgctcctggcaagaatggagaacggggtggc
cctggaggacctggccttccaggtcctgctggaaagaatggtgaaactggacctcagggt
cccccaggtcctactggcccatctggtgacaagggagaatctggaccccctggtccacaa
ggattacaaggaatacctggtaccagtggtcctccaggagaaaatggaaaaccaggtgaa
ccagggccaaagggagaagttggtgcacctggagttcccgggggcaagggtgatgccggt
gcccctggagaacgtggaccacctggaactgcaggggcccctggtcttagaggaggagct
ggaccccctggccctgagggaggaaagggccctgctggcccccctggtcctcctggtact
tctggttctcctggtctacaagggatgcctggagagagaggaggtcctgggagtcctggt
ccaaagggtgaaaagggtgaaccagggggtgccggtgctgacggagctccaggaaaggat
gggccaaggggtcctactggtcctattggtccccctggcccagctggtcagcctggagat
aagggtgaaggtggtgcccctggacttccgggtatagctggacctcgaggtggccctggt
gagagaggtgaacatgggcctccaggacctgctggcttcccgggtgctcctggacagaat
ggtgaaccaggcgctaaaggagaaagaggtgcccctggagagaaaggagaaggaggccct
cctggacctgcaggacttcctggaggttctggacctgctggtcctcctggtcctcaaggt
gtcaagggtgaacgtggcagtcctggtggtcctggtgctgctggctttcctggtggacgt
ggtcttcctggtcctcccggcaacaatggtaacccaggccccccagggcctagtggtgct
cctggcaaggatggtcctccaggtcctgctggtaacagtggttcccctggcaacccggga
gtagctggaccaaaaggtgatgctggtcagcctggagagaagggaccacctggtgctcaa
ggccctccgggatctccaggcccacttggaattgcaggacttacaggagcacgaggtctt
gctggaccaccaggcatgccaggtcctaggggtagccctgggcctcaaggtatcaagggt
gaaagtggaaaaccgggagccagtggccataatggagaacgtggtcctcctggaccccaa
ggtcttcctggtcaacctggtacagctggtgaacccggaagggatggaaaccctggatca
gatggtcagccaggacgagatggatctcctggtggcaagggtgatcgtggtgaaaatggc
tctcctggtgccccaggcgctcctggtcatccaggaccacctggtcctgttggtccagct
gggaaaagtggtgacagaggagaaacggggcctgctggtccttctggtgctccaggtcct
gctggatctcgcggtcctcccggtccccaaggtcctcgaggtgacaaaggtgaaactggt
gaacgtggctccaatggcatcaaaggacatcgaggattccctggcaatccaggtccccca
ggttctcctggtgctgctggtcaccagggtgcagttggtagtcctggacctgcaggtccc
agaggaccagttggaccacatgggcctcctggaaaagacggaactagtgggcatccaggt
cccattggaccaccaggacctcgaggcaacagaggtgaaagaggatctgaaggctcacca
ggccaccctgggcagccaggcccccctggacctcctggtgcacctggtccttgctgtggt
ggaggtgctgctgcccttggaggtggtggtgaaaagtctggtggattttcaccatattat
ggagatgaaccaatggatttcaagattaacaccgaggagattatgtcttcactcaagtct
gttaatggacaaatagaaagcctcattagtcctgatggttctcgtaaaaaccctgctcgc
aactgcagagacctgaaattctgccatcctgatctcaagagcggagaatattgggttgat
cctaaccaaggttgcaagatggatgctatcaaagtattctgtaacatggaaaccggggag
acatgcataaatgctagtcctatgactgtgccacggaagaactggtggacagatgcctct
gctgaaaagaaacatgtttggtttggagaatctatgaatggtggatttcagttcagttat
ggcaatcctgatcttcctgaagatgtccttgatgtacagctggcttacctcagactcctc
tccagccgggcttcccagaacattacataccactgcaagaacagcattgcctacatggat
caggccagtggcaatgtaaagaagtctctaaagctgatgggatcaaatgaaggggaattc
aaggctgaaggaaacagcaaattcacttacacagttctggaggatggctgtgctaaacac
actggggagtggagcaaaacagtcttcgaataccgaacgcgcaaggccctgagactgccc
atcatagatatcgcaccctatgacatcggtggtcccgatcaagaatttggtgtggacatt
ggccctgtttgctttttataa
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