Cricetulus griseus (Chinese hamster): 100755037
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Entry
100755037 CDS
T02813
Symbol
Col2a1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
cge
Cricetulus griseus (Chinese hamster)
Pathway
cge04151
PI3K-Akt signaling pathway
cge04510
Focal adhesion
cge04512
ECM-receptor interaction
cge04974
Protein digestion and absorption
cge05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
cge00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100755037 (Col2a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100755037 (Col2a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100755037 (Col2a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100755037 (Col2a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
100755037 (Col2a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cge00536
]
100755037 (Col2a1)
Glycosaminoglycan binding proteins [BR:
cge00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100755037 (Col2a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
100755037
NCBI-ProteinID:
XP_027252232
UniProt:
A0A8C2LDY5
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All DBs
Position
2:complement(394461915..394489846)
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AA seq
1486 aa
AA seq
DB search
MIRLGAPQSLVLLSLLIAAVLRCQGQDDEDAGSCLQDGQIYKDKDVWKPTSCRICVCDTG
NILCDDIVCEDKDCLNAEVPFGECCPICPADLTPASGQLGPKGQKGEPGDIKDIKGPKGP
PGPQGPAGEQGPRGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPAGPPGLTGNFAA
QMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGP
RGPPGPPGKPGDDGEAGKPGKSGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGE
AGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGP
AGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGNPGSPGPAGASGNPGTDGIPGAKGS
AGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQMGEPGIAGFKGEQGPKGETGPAGPQGA
PGPAGEEGKRGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGP
KGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGV
MGFPGPKGANGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGP
SGFQGLPGPPGPPGEGGKQGDQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGARGL
PGTPGTDGPKGAPGPDGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGK
DGGRGLTGPIGPPGPAGANGEKGEVGPPGPSGSTGARGAPGERGETGPPGPAGFAGPPGA
DGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGA
AGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDTGSPGRAGDPGLQGPAGPSGEKGEPGD
DGPPGSDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGP
VGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALGAPGAPGPPGAPGPAGP
TGKQGDRGESGAQGPMGPSGPAGARGIPGPQGPRGDKGESGEPGERGVKGHRGFTGLQGL
PGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPAGP
PGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAASSLRQHDVEVDATLKS
LNNQIESIRSPDGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGE
TCVYPNPATVPKKNWWSSKGKEKKHIWFGETMNGGFHFSYGDGHLAPNTANVQMTFLRLL
STEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEMRAEGNSRFTYTALKDGCTKH
TGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4461 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagtcactggtgctgctgtcactgctcatcgctgcggtt
cttcggtgtcagggccaggatgacgaggatgctggcagctgtttgcaggatgggcaaata
tataaagataaggatgtatggaagcccacatcctgccgcatctgtgtgtgtgacactggg
aatatcctctgcgacgacatagtctgtgaagacaaagactgcctcaacgccgaggtcccc
ttcggagagtgctgtcccatctgcccagctgacctcacccctgccagtggacaactagga
ccaaaggggcagaaaggagaacctggagacatcaaggatatcaaaggacctaaaggacct
cctggccctcagggacctgctggtgaacaaggacccagaggtgatcgtggtgaaaaggga
gaaaagggtgcacctggacctcgtggccgagatggagagcctggtacccctggaaatcct
ggtccccctggccctccaggccccgctggtccccctggccttactggaaactttgcagcc
caaatggctggaggatttgatgagaaggctggtggtgcccagatgggagtgatgcaaggt
ccgatgggccccatgggacctcgaggacccccaggccccgctggcgcccccggccctcaa
ggatttcaaggcaatcctggtgaacctggcgagcctggtgtctctggtcccatgggtccc
cgtggtcctccaggccctcctggaaaacctggtgatgatggcgaagctgggaaacctgga
aaatctggagaaagaggccttcctggccctcagggtgctcgtggattcccaggaacccca
ggccttcctggtgtcaaaggtcacagaggttacccaggcctcgatggtgctaagggagaa
gctggtgctccaggtgtgaagggtgagagcggttcccctggtgagaatggttccccaggc
ccaatgggtccccgaggcctgcctggtgagagaggaaggactggtcctgctggtgctgct
ggtgcccgaggcaacgatggccagccaggccctgctggacctccgggtcctgtcggtcct
gcaggtggtcctggcttccctggagctcctggtgccaagggggaagctggccccactggt
gcacgtggtcctgaaggtgctcaaggtcctcgtggcgagcctggcaatcctgggtcccct
gggcccgcaggtgcttctggtaacccaggaaccgacggcattcccggagccaaaggatcc
gctggcgctcctggaattgctggtgcccctggcttccctgggcctcgtggtcctcctggt
cctcaaggtgcaacgggtcctctgggtcccaaaggtcagatgggtgagcctggcattgct
ggcttcaaaggtgaacaaggtcccaagggagaaactggccctgcagggccccagggtgcc
cctggtcctgctggtgaggaaggtaaaagaggcgctcgaggggagcctggcggtgctgga
cctatcggtccccctggagaaagaggtgcccctggcaaccgtggtttccctggtcaagat
ggtctggcaggtcccaagggtgcccctggagagcgagggcctagtggcctggctggtccc
aagggagccaatggtgacccgggtcgtcctggagaacctggccttcctggagcccggggt
cttacgggtcgtcctggtgatgctggccctcaaggcaaagttggtccttctggagcccct
ggtgaagatggtcgtcctggacctcctggtccacagggggctcgtgggcagcctggtgtc
atgggtttccctggccccaaaggtgccaacggtgagcctggcaaagctggtgagaaggga
ctggctggtgctcctggtctgagaggtctgcctggcaaagatggtgagacaggggctgca
ggaccccctggccctgctggacctgctggtgaacgaggcgagcagggtgctcctgggcca
tcagggttccagggacttcctggcccgcctggtcccccaggtgaaggtggaaaacaaggt
gaccagggtattcctggtgaagctggagctcctggccttgtgggtcccaggggtgaaagg
ggtttcccaggtgaacgtggctctcctggcgcacaaggcctccaaggtgcccgtggcctc
cctggcacccctggtactgatggtcccaaaggtgcacctggcccagatggcccccctggg
gctcagggtcctccaggtctccagggaatgcctggcgagaggggagcagctggtattgct
gggcccaagggagacagaggcgatgttggtgaaaaaggtccagagggggctcctggaaag
gatggcggacgaggtctgactgggcccatagggcccccaggcccggcaggtgccaacggc
gagaagggggaagtcggacctcctggcccttcaggaagtactggtgctcggggcgctccg
ggtgaacgtggagagactgggccacctggacctgctggatttgctggacctcctggtgct
gatgggcagcctggcgccaagggtgatcaaggagaggccggacagaaaggagatgctggt
gcccctggtccccaaggcccctctggagctcctgggccccagggtcctactggagtgact
ggtcctaagggagcccgaggcgcccaaggtcccccgggagccactggattccctggagct
gctggccgcgttggacccccaggctctaatggcaatcctggaccccctggtcctcctggt
ccttctggaaaagacggtcccaaaggtgctcgaggagatactggttcccccggccgagct
ggtgaccctggacttcaaggccctgcaggaccttctggcgagaaaggagaacctggagat
gatggtccccctggttctgatggtcctccaggtcctcaggggctggcaggtcaaaggggc
attgttggtctacctggacagcgtggtgagagaggattccctggccttcccggcccatcg
ggtgagcccggcaagcagggtgcgcctggtgcatctggagacagaggtcctcctggccct
gtggggcctcctggcctgacaggtcctgcaggtgaacctggacgagagggcagccctggt
gctgacggacctcctggcagagatggtgcagctggagtcaagggtgatcgcggtgagact
ggtgcactgggcgctcctggggctcccgggcccccaggagctcctggccctgctggccca
actggaaaacaaggagacagaggagagtctggtgcacaaggacccatgggcccctcagga
cccgctggagcccgtggaatcccaggccctcaaggcccccgaggtgacaaaggagaatct
ggagagcctggcgagaggggagtgaagggacaccgaggcttcactggactgcagggtctg
cctggccctccgggtccttctggagatcaaggtgcttctggcccagctggtccctctggc
cctagaggtccacctggccccgttggtccctctggcaaagatggctctaatggaatccct
ggccccattgggcctcctggtccccgtggacgttcaggagaaactggccctgctggtcct
cctggaaatcctggtccccctggccctccaggtcctcctggtcctggcatcgacatgtca
gcctttgctggcttaggccagagagagaagggccctgatcccctgcagtacatgcgggcc
gatgaggcagccagttccctgagacagcatgacgttgaggtggatgccacactgaagtca
ctcaataaccagattgagagcattcgaagtcctgacggctcccgcaagaatcctgctcgc
acctgccaagacctgaaactctgccacccagagtggaagagcggagactactggatcgac
cccaaccagggctgcaccttggacgctatgaaagttttctgcaacatggagacaggcgag
acttgtgtctaccctaatccagcaactgtgccaaagaagaactggtggagcagcaagggc
aaggagaagaagcacatctggtttggcgaaaccatgaacggcggcttccacttcagctat
ggcgatggccacctggctcccaacactgctaacgtccagatgactttcctgcgtctactg
tctactgagggttcccagaacatcacttaccactgtaagaacagcattgcctacctggac
gaagcagctggtaacctcaagaaggccttactcatccagggctccaatgatgtggagatg
agggctgagggcaacagcaggttcacgtacactgccctgaaggatggctgcacgaaacac
accggtaagtggggcaagactgtcattgagtaccggtcacagaagacctcacgccttccc
atcattgacattgcacccatggacattggagggcctgaacaggaatttggtgtggacata
gggcctgtctgcttcttgtaa
DBGET
integrated database retrieval system
