KEGG   Cricetulus griseus (Chinese hamster): 100757132
Entry
100757132         CDS       T02813                                 
Symbol
Seh1l
Name
(RefSeq) nucleoporin SEH1 isoform X2
  KO
K14299  nucleoporin SEH1
Organism
cge  Cricetulus griseus (Chinese hamster)
Pathway
cge03013  Nucleocytoplasmic transport
cge04150  mTOR signaling pathway
cge05014  Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:cge00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    100757132 (Seh1l)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    100757132 (Seh1l)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    100757132 (Seh1l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cge03019]
    100757132 (Seh1l)
   04131 Membrane trafficking [BR:cge04131]
    100757132 (Seh1l)
Messenger RNA biogenesis [BR:cge03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     100757132 (Seh1l)
Membrane trafficking [BR:cge04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    100757132 (Seh1l)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd WDR90_beta-prop_4th Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_EIPR1 WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_WDR35_TULP_N Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_WDR19_1st Beta-prop_IFT140_1st
Other DBs
NCBI-GeneID: 100757132
NCBI-ProteinID: XP_027258485
UniProt: A0A9J7FIJ2
LinkDB
Position
2:complement(171618912..171643390)
AA seq 420 aa
MFVARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVK
FAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSP
MIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHILAI
ATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDG
CVRLWKANYMDNWKCTGILKGNGSPVNGTSQLGNSNPSLSSNTPNLQNSLHGSSAGRYFF
PPLDSPRAGSRWSSCAQLLPPPAPLVEHSCDADSANLQYPHPRRGDRSRPLNPLPENEGV
NT seq 1263 nt   +upstreamnt  +downstreamnt
atgtttgtggcgcgcagcatcgcggcggaccacaaggacctcatccacgatgtgtctttc
gacttccacgggcgccggatggccacctgctccagcgaccagagcgtcaaggtctgggat
aaaagtgaaagcggagattggcattgtactgctagttggaagacacatagtggatctgta
tggcgtgtgacatgggctcatcctgaattcggacaagttttggcttcctgttcttttgac
cgaacagcagctgtttgggaagaaatagtaggagaatcaaatgataaactccgaggacag
agtcactgggtgaagaggacaactctagtggatagtagaacatctgttactgatgtgaaa
tttgctcccaaacatatgggtctgatgttagcaacctgttcagcagatggtatagtaaga
atatatgaggccccagatgttatgaatctcagccagtggtctctacagcacgagatctca
tgtaagctgagctgtagctgtatttcttggaacccttccagctctcgtgctcactccccc
atgatcgccgtgggaagtgatgacagcagtccaaacgcaatggccaaggttcagattttt
gagtacaatgaaaacaccaggaaatacgcaaaagcagaaactcttatgacagtcacagat
cctgttcatgatattgcctttgctccaaatttggggagatctttccacatcctggcaata
gccaccaaagatgtaagaattttcacattaaaacctgtgaggaaagaacttacttcttct
ggtggtcccacaaaatttgaaatccatatcgtggctcagtttgataatcacaactctcag
gtctggagggtgagttggaacataacaggaacagtgctagcatcctcaggagatgacggc
tgcgtgaggttgtggaaagctaattacatggacaattggaagtgtactggaattttgaaa
ggtaacgggagcccagtaaatgggacttctcagctgggaaactcaaatccttcactaagt
tcaaatactccaaatcttcaaaactcattacatggatcttctgctggcaggtatttcttt
ccccctctggattccccacgggctggatcgagatggtccagttgtgcccagctcctccct
cctcctgctcctctggtagagcactcttgtgatgccgactccgccaacctccagtatcct
caccctcgccgaggggaccgctctcggcctcttaatcccttacctgagaatgaaggggtt
taa

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