Cricetulus griseus (Chinese hamster): 100757538
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Entry
100757538 CDS
T02813
Symbol
Pabpc1
Name
(RefSeq) polyadenylate-binding protein 1 isoform X2
KO
K13126
polyadenylate-binding protein
Organism
cge
Cricetulus griseus (Chinese hamster)
Pathway
cge03015
mRNA surveillance pathway
cge03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cge00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100757538 (Pabpc1)
09123 Folding, sorting and degradation
03018 RNA degradation
100757538 (Pabpc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cge03019
]
100757538 (Pabpc1)
03041 Spliceosome [BR:
cge03041
]
100757538 (Pabpc1)
Messenger RNA biogenesis [BR:
cge03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100757538 (Pabpc1)
mRNA cycle factors
Stress granule specific factors
100757538 (Pabpc1)
Spliceosome [BR:
cge03041
]
Complex C
Other components
Complex C specific factors
100757538 (Pabpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RRM_10
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
100757538
NCBI-ProteinID:
XP_027287290
UniProt:
A0A3L7ISI1
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Position
10:14910163..14921338
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AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ
RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNSAAGVPSV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctccctgtacgtgggggacctgcacccc
gacgtgacggaggcgatgctctacgagaagttcagcccggccgggcccatcctctccatc
cgggtatgcagggacatgatcacccgccgctcgttgggctacgcgtacgtgaacttccag
cagccggcggacgcggagcgtgctttggacaccatgaattttgatgttataaagggcaag
ccagtgcgcatcatgtggtctcagcgtgatccatcccttcgcaaaagtggagtgggcaac
atattcattaaaaatttggacaaatccatcgacaataaggcactgtatgatacgttctct
gcatttggaaatatcctctcatgtaaggtggtttgtgatgaaaatggctccaaaggctat
ggatttgtacactttgaaacacaggaagctgcagaaagagctattgaaaaaatgaatggg
atgcttctaaatgaccggaaagtgtttgttggacgatttaagtctcgaaaggaacgagaa
gcagagcttggagccagggcaaaggagttcaccaacgtttacatcaagaactttggagaa
gacatggatgatgagcgccttaaggatctcttcggcaagtttgggcctgccttaagtgtg
aaagtaatgaccgatgaaagtggaaaatccaaaggatttggatttgtaagctttgagagg
catgaagatgcgcagaaagctgtggatgagatgaatggaaaggaactcaatggtaaacag
atttatgttggtcgagctcagaaaaaagtggaacgacagacagagcttaagcgcaaattt
gagcagatgaagcaagataggatcaccagataccagggtgttaacctttatgtgaaaaat
cttgatgatggcattgatgatgaacgtctccggaaagagttttctccatttggtacaatc
accagtgcaaaggttatgatggagggtggtcgcagcaaagggtttggttttgtgtgtttc
tcatctcctgaagaagccactaaagcagttacggaaatgaatggcagaattgtggccaca
aagccactctatgtagctttagctcagcgcaaagaagagcgccaggctcaccttactaac
cagtatatgcagagaatggcaagtgtgcgagctgtgcccaaccctgtgatcaacccctac
cagccagcacctccttcaggttacttcatggcagctatcccacagactcagaaccgtgct
gcatactatcctcctagccaaattgctcaactaagaccaagtcctcgctggactgctcag
ggtgccagacctcatccgttccagaacatgcccggtgctatccgcccagctgccccccgg
ccaccctttagtaccatgaggccagcctcctcgcaggtcccccgcgtcatgtcgacacag
cgtgttgctaacacttcaacacagaccatgggtccacgtcctgcagctgctgctgctgca
gccacgcctgctgtccgcaccgttccccagtacaaatacgctgcgggagtccgcaacccc
cagcaacatcttaatgcccagccgcaagttaccatgcaacagcctgctgttcatgtgcaa
ggtcaagaacctttaactgcttccatgttggcatctgcccctcctcaagagcaaaagcaa
atgttgggtgaacggttgttccctcttattcaagccatgcaccccactctggctggtaaa
atcacgggcatgctgttggagattgataactcagaactacttcacatgcttgagtctccc
gagtctctccgctcaaaggttgatgaagctgtagctgtactacaagcccaccaagcaaaa
gaggctgcccagaaggcagtgaacagtgccgctggagttccatctgtttaa
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