Cricetulus griseus (Chinese hamster): 100758025
Help
Entry
100758025 CDS
T02813
Symbol
Shoc1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog isoform X2
KO
K28108
shortage in chiasmata 1
Organism
cge
Cricetulus griseus (Chinese hamster)
Brite
KEGG Orthology (KO) [BR:
cge00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cge03036
]
100758025 (Shoc1)
Chromosome and associated proteins [BR:
cge03036
]
Eukaryotic type
Meiosis-specific proteins
Others
100758025 (Shoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
100758025
NCBI-ProteinID:
XP_035295755
UniProt:
A0A9J7GTZ7
LinkDB
All DBs
Position
2:84724640..84804586
Genome browser
AA seq
1477 aa
AA seq
DB search
MFSAFKYYAIDYLHENTVKERLYRDALLLQIPSCLNQDKNFIDDKYRSPWTRVSGISVPE
MTDNSGLEQWTTRFSVEDIPEKKTVTGMMINGTFEEIVPSSNPNSPTGIENVSLYLSKDY
REDFTPLKCSPHYPGVKAEHQGLLIDEEMIFINKAVGKHLPTVDSLLSRLKLYLVKDPLL
DFKEQLSGKDNFTLIFYLRECFSVRERLEPFVRDFHMAEETFCKKKLVCFNRIPSVFPSE
FEFLISTNLKQEIPILPSSELKESLNSIPEIMDYVDENEKLFKRDLSTKQELDAEDMKCS
STEILPIESPSEPECKEPGEFEIPLTNLSLPRQHSPGSSLGAGFHTFPFSAVCKINLLSA
GESTNKYCMLWQLGSCRNSWVSFLLTVPRFQEPSSQYSLADMRNIFSIKEDSLVINPAKA
KRWRQARLNPIMAETLEHLKAYLCHNGLSSKETKLEIFLPMKVLQLEPWLEHQSRPLPIM
PRSEKSTSVHRLHTHKRASSEKEVPHLFLSDECVSVKKPKKEENPKNNQEVAATMMQNTD
DSRIGLNHSVPSVEPTSSSWIKASYDKKQNDLDLLSEFITLRSKCKTFTSDAEVTGHHQN
NDKEKCSLTLQEESPIVPNNKTPEEVCQERADDVIEIQASDIQCQAYCLLEAAATPVLEK
LACLCTYPAADWKFATVIFDQTRFFLKEQEKIINDAVHQGKNDDREMKFRHAALLHLLVT
IRDVLLACSLDTALGYLSNAKDIYKSMLDSCLDNIWRQLKILQFTKGKRPKTNYKIEELQ
CQILSRLQSQQQIKVLIIIRMDSDGEKHLLIKTLKKIEGLTLTVLRSNERKDFLETTGVL
KGASSCVVVHNHSIGADFPWSSFSLVVEYNHVGHSCWPKHCQQLNVPFLAFKVVLPDTAL
KRNTLLDRFGGFLLEIQIPYIFFASEGLLNTPEILRLLESDYNITLVERCCCESLKLFGS
TECYVVVTIDEQTAVVVQDLGELYYEKASDNIIMRLMALSFQYSCCWIILYPKATLNSEY
HLTEKTLHHLSQIYAALASSGLKSEELDVKLIIAPGVEETALIIRQIADHNLMTSKRDPH
EWLDKSWVEVSPSQEEMNLLDFPCINPLVAQLMLHRAPSLHWLLTASHTDLQGLLPQVPD
KVLKHFCSITSLFKISSSSMTKSPRISSLQEDMNRSRPFISQSLAAVIQEHDGYCSYGDS
EEAVLEGTSSSLLGLRETPYMLPSAASHSHTSSWTDSICDPNAVQDNPFLINEESKKVTR
HSFPSQDDSESGVFSLGLTQINCGPEMLPTDTQRRVIHNFVSYPKAEGSRNMQVSTPAFL
PEASQPYRYWDFKKNSDRKQIHSLSSSCRAEQTTYNKWYPQKDELFSDQPEHLWADLEEF
TYRHSTAGRELPSVSSWDSFCAPDFNVNPRGFNGLNFYQTSGNYLGQRRLPVSSSSWGDY
ETPTGLMYSQVPQPKRQRLTYEKVPGRMDGQTRLRFL
NT seq
4434 nt
NT seq
+upstream
nt +downstream
nt
atgttttcagcattcaaatattatgcaatagactatttacatgagaacacagttaaagaa
aggctttacagagatgctttgctgcttcagatcccttcatgtttaaatcaagacaaaaat
tttattgatgataaatataggagtccatggacaagagtgtcaggtatttcagttccggag
atgacagataattcaggcttggaacagtggacaactaggttctctgtggaggacattcct
gagaaaaagacagttacaggaatgatgattaatggtacatttgaggaaattgttccaagt
tccaatccaaactctccaactggaatagagaatgtcagcttgtacctcagtaaggactac
agagaagactttacacctctcaagtgctccccacactacccgggagtgaaagcggagcat
caaggattacttattgatgaggaaatgatttttataaataaagcagtgggaaagcatcta
ccaactgtggatagtctcttgagtagactaaagctctatctggttaaggatccactttta
gatttcaaagaacagctatccggaaaggataatttcactttgattttttatttaagggag
tgtttctctgttcgagaacgtttggaaccttttgtgagagatttccatatggcggaggag
accttttgtaagaagaagctagtatgtttcaatagaattccatcagtttttccttctgag
tttgaattcttaatatccacaaacctcaaacaagaaattcctattctgccatcatcagaa
ctgaaggagtcattaaactcaatacctgagataatggactatgtagatgaaaatgaaaaa
cttttcaaaagagatctttctaccaagcaggaacttgatgctgaggatatgaaatgcagc
tccacggagatcttacctattgaaagcccgagtgaaccagagtgcaaagaaccaggagaa
tttgaaataccactaaccaatctaagcttaccaaggcaacattctccagggagttcattg
ggtgccggattccatacatttccattttctgctgtgtgtaaaattaatttgcttagtgct
ggagaatcgactaataaatattgtatgctgtggcaactgggaagctgcagaaactcttgg
gtctcattcttgcttacagttccaagatttcaagagcccagcagtcaatattctcttgca
gatatgaggaatatattttctatcaaagaagacagccttgtgattaaccctgcaaaagca
aagaggtggagacaagcaagactaaatccaataatggccgaaactttggagcatttgaaa
gcatatttgtgtcacaatggtctgtcttctaaggaaactaagctggagatctttctgcct
atgaaagtgcttcagctggaaccctggctagaacatcagagtcgacctttgcccatcatg
cccaggagtgagaagtctaccagtgttcacagattacatacacacaagagagcatcttca
gagaaagaagtgccacatctgtttttgtctgatgaatgtgtctctgttaaaaagccaaaa
aaggaagaaaatccaaagaataaccaagaagtagctgctacaatgatgcagaacacagat
gatagtcgaattggacttaatcactctgtgccatctgttgaaccaacttcctcttcatgg
atcaaggcatcttatgataaaaaacagaatgatttggaccttttgagcgagtttattact
ctgagaagtaaatgcaagactttcacttcagatgctgaagtcacaggccatcaccaaaac
aatgataaagaaaagtgttctttgactcttcaagaagaaagtcctattgttcctaataac
aaaactccagaggaagtatgtcaagaaagggcagatgatgtcatcgagattcaagcatca
gacatccagtgccaagcatactgtctcctagaagcagcagcaactcctgtcttagagaag
cttgcttgtctctgtacttaccctgctgctgattggaaatttgccactgtcatttttgac
caaacaagattcttcttaaaggaacaagaaaaaataataaatgatgctgttcaccaaggt
aaaaatgatgacagagaaatgaagttcagacatgctgctctcttacatctcctggtaaca
atcagagatgtccttttagcatgcagcttggatacagcattaggatatttgtcaaatgca
aaagatatctacaaaagcatgttggactcctgcttggataacatttggagacagctgaaa
attttacagtttactaaggggaaaaggcctaaaaccaactataagatcgaagaattacaa
tgtcagatactaagcaggttgcaaagtcaacaacaaattaaggtactaattataataaga
atggactccgatggagaaaagcatttacttattaaaacccttaagaaaatagaaggctta
acattgactgttttacgttcaaatgagagaaaagattttctggaaactactggtgtttta
aaaggtgcaagttcctgtgtggttgtgcataatcacagtatcggagcagattttccctgg
agcagcttctcactggtggtagagtacaatcacgtgggacactcttgctggcctaagcac
tgccagcagttgaacgttcctttcctggcctttaaagtcgttcttccagacacagctctg
aaaagaaacaccttgctggatagatttggtgggtttctcttggaaattcagatcccatac
atattttttgcatctgaaggattgcttaataccccagaaatactccggctgctggaatct
gactataatatcacactagtggagagatgctgctgtgagtcactgaaactcttcgggagc
acagagtgttatgtagtggtcacaatcgatgagcagactgctgtagttgtgcaggaccta
ggagaattatattatgagaaggcatcagacaatatcattatgagattaatggcattgtca
ttccagtatagctgttgttggataatactatatcccaaggcaacattaaattcagagtac
catctcacagagaagacacttcatcacctctcacagatttatgcagctttagcttcctct
ggtcttaaatctgaagaactggatgtaaagcttataattgctccaggagtagaagagact
gctttaataattcgacaaatcgcagaccacaatttaatgacatcgaagagagatcctcat
gagtggttggataaatcctgggttgaagtttcaccatctcaggaagagatgaacctactt
gatttcccatgtattaacccactggtggctcagctcatgttacacagagctccttctctg
cactggctgctgacagcatcgcacactgatcttcagggactcctaccccaggttccagac
aaagtactgaagcatttttgtagcatcacttccttgttcaagattagttcttcctccatg
acaaagtcacctcgaatttcatcacttcaggaagatatgaatcgaagtcgaccctttatt
tctcagagtctggctgctgttattcaagaacatgatggatattgttcctatggagactct
gaagaagcagtgctggaaggcacaagctcttctcttctggggctaagagaaacaccgtac
atgttgccatctgcagcatctcacagtcacaccagttcctggacagactccatatgtgac
cctaatgcagtgcaggataatccttttctaattaatgaggaatcaaagaaagtgactcgg
cactcctttccaagtcaggatgattcagaatcaggtgtcttttctctgggcctaacacaa
ataaactgtggacctgaaatgttgccaactgatactcagaggagagttattcataatttt
gtaagttatcctaaagcagaaggaagcagaaacatgcaagtgtccacccctgccttttta
ccagaggcttctcaaccctaccgttattgggactttaagaaaaacagtgatagaaaacag
atccattcattgagttcaagctgtagagcagaacagactacctacaacaaatggtaccca
caaaaagatgagttattcagtgatcagcctgagcatctttgggctgacttggaagagttc
acatacagacattcaactgctgggagagagctgccgtctgtttccagctgggattcattc
tgtgctcctgattttaatgtaaacccaagaggattcaatggccttaatttctaccaaaca
tctgggaactacttaggacagagaagactccctgtatcttcatctagttggggagactat
gaaacaccaacaggcttaatgtactcacaagtaccacaacccaaaagacaacgtctaaca
tatgaaaaagtccctggaagaatggatggacaaacccggctgagattcttatga
DBGET
integrated database retrieval system
