KEGG   Cricetulus griseus (Chinese hamster): 100761430
Entry
100761430         CDS       T02813                                 
Symbol
Snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein isoform X2
  KO
K12857  Prp8 binding protein
Organism
cge  Cricetulus griseus (Chinese hamster)
Pathway
cge03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cge00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100761430 (Snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cge03041]
    100761430 (Snrnp40)
Spliceosome [BR:cge03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    100761430 (Snrnp40)
 Complex C
   U5 SnRNP specific factors
    100761430 (Snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_TEP1_2nd WD40_CDC20-Fz WD40_WDHD1_1st EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_SCAP WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_WDR35_TULP_N eIF2A Beta-prop_NWD2_C Beta-prop_HPS5 Beta-prop_RIG_1st Cytochrom_D1 WD40_like WDR54 Beta-prop_Nup120_160 PROPPIN
Other DBs
NCBI-GeneID: 100761430
NCBI-ProteinID: XP_027255237
UniProt: A0A8C2LIM2
LinkDB
Position
2:complement(22659818..22692698)
AA seq 358 aa
MIEQPKRKGPELPLVPVKRPRHELLLGAAGAGPGAGQPQATPGALLQAGPPRCSSLQAPI
MLLSGHEGEVYCCKFHPNGSTLASSGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgatcgagcagccaaaacgcaagggcccggagctgccactggttcctgtcaagcggccg
cgacatgagttgctgttgggagccgcgggggccggccccggagccggacagccgcaggcg
actccgggagctttgctgcaggcgggacctccaaggtgttcttcccttcaagccccaatc
atgttgctctcaggacacgaaggagaagtgtactgctgcaagtttcaccccaatggatcc
accttggcatcttcaggatttgaccgactcatattattgtggaatgtctatggtgactgc
gataactatgccacattgaagggacacagtggagcagtaatggagctgcattataacaca
gatggcagcatgctcttctcagcatcgacagataaaactgtggctgtgtgggatagtgaa
acaggcgagagggttaaaaggctgaagggtcacacttcctttgtgaactcatgttatcca
gccagacggggcccacagcttgtctgcactggcagtgacgatggtacagttaagctttgg
gacatccgcaagaaagcagctatccagacatttcagaacacataccaggtgttagctgtg
accttcaacgacacaagtgatcagattatctctggtggaatagacaacgatatcaaggtt
tgggacctgcgtcaaaacaagttaacctataccatgagaggccatgcagattctgtcacc
ggcctgagtttaagttctgagggatcttatctcttgtccaatgcaatggacaatacagtg
cgagtctgggatgtccggccctttgctcccaaagagagatgtgtgaagatatttcaagga
aatgtgcacaactttgaaaagaacctcctccggtgttcttggtcacctgatggaagcaag
atagctgctggctcagcagacaggtttgtgtacgtatgggacaccaccagcagaaggatc
ctgtataagctgcctggccatgctggctccatcaatgaagtggctttccaccctgacgag
cctatcatcctctcagcatccagtgataagaggctgtatatgggtgagatccagtga

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