Cricetulus griseus (Chinese hamster): 100761778
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Entry
100761778 CDS
T02813
Symbol
Cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cge
Cricetulus griseus (Chinese hamster)
Pathway
cge03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cge00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100761778 (Cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cge03019
]
100761778 (Cnot1)
Messenger RNA biogenesis [BR:
cge03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100761778 (Cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100761778 (Cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
100761778
NCBI-ProteinID:
XP_027261512
UniProt:
A0A9J7FKI3
LinkDB
All DBs
Position
3:complement(171907826..171995707)
Genome browser
AA seq
2393 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSEGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDFIYRPWKHAEGQLSFIQHSLINPEVFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPAETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVSG
LGTGSLTGIGTGGLGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEVSAPISNIRQYIEYGQQSRDPPVKMQGSIT
TPGSIALAQAQAQAQVPAKAPLAGQVNTMVTTSTTTTVAKTVTVTKPTGVSFKKDVPPSI
NTTNIDTLLVATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWV
SQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRS
LLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSL
VFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLK
NLDEQLSAPKKDVKQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGL
APHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFAL
DSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQ
AAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQA
ERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQ
IYDKCITELEQHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLL
DATSGADADLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVEL
LIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIET
LMRINAHSRGNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLRE
KAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCT
EMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLL
NKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTF
HILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVE
LTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLP
DPFTPNLKVDMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVS
NEPGNRYNLQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGR
YLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLL
ITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7182 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgtctattttcacatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacagtttctgattcaggagtgtgcctcg
ctgattacaaagccaaattttatctcaacattgtcctatgccattgataatcctttgcac
taccagaagagtttaaagcctgcaccccatttatttgcccagctgagtaaagttctcaag
ttaagtaaagtacaagaggtaatttttggtcttgcccttttgaattcttctagctcagat
ctcaggggttttgctgcccagtttatcaaacagaagcttccagatcttctgcgttcttac
atagacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacatctcctactctcccatctcctctttgggcagaagggagcctttggagttggacag
gaacagatagacgcttttcttaagacactgcgcagagattttccccaagagcgttgtcct
gtggtgcttgcaccacttttataccctgaaaaacgggacattctaatggacaggatcttg
cctgattctggaggggtagctaaaaccatgatggagagctctctggctgatttcatgcaa
gaagtaggctatggcttttgtgcaagtattgaagaatgtcgaaatataatcatgcagttt
ggtgttcgggaggtcacagctgcccaggttgccagggttttgggaatgatggctcgaact
cattcaggattaacagacggtattccattacagagcatctctgctcctggcagtgggatc
tggagtgatggaaaagataaaagtgagggcgcacaggcacacacatggaatgtagaggtt
ttgattgatgttcttaaagaactgaaccctagtttgaatttcaaggaagtaacttatgag
ctggaccatcctggatttcaaattcgtgatagcaaaggacttcacaatgtggtttatggt
attcagagaggcctaggcatggaagtgtttccagtggattttatatataggccttggaaa
catgcagaaggccagctctctttcatccagcattccctgataaacccagaggtcttctgc
tttgctgactacccctgtcatactgttgccactgacattttgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaaaagcttggatttgattgaatctctgctgaggctt
gcagaggttgggcagtatgagcaagtgaaacaactcttcagcttccctatcaaacactgt
ccagacatgttggtattggccttactacaaatcaacacctcctggcacaccttacgccat
gaactcatctctactttgatgccaattttccttggaaaccatcctaactctgccattatt
ttgcactatgcatggcacgggcagggacagtctccatcaattcgccaacttataatgcat
gcaatggcagaatggtacatgagaggagaacagtatgatcaggccaaattgtctcgaata
cttgacgtggcccaggacttgaaggccttgtcaatgctgctaaatggcactccatttgcc
tttgttattgaccttgctgcacttgcttcacggcgtgaatacctcaaacttgacaagtgg
ctaacagataaaataagagaacatggggagccttttatacaagcatgtatgactttttta
aagagacggtgcccttctattttgggtggacttgccccagagaaagatcagcccaaaagt
gctcaacttcctgctgaaactctagcaacaatgttggcttgtctacaggcttgtgccggg
agtgtttctcaggagttatcagagaccattctcaccatggtagccaattgcagtaatgta
atgaataaggccagacagccaccacctggagttatgccaaaaggtcgccctcctagtgct
agcagcttagatgccatttctcctgttcagattgaccctcttgctggaatggcatctctt
agtataggtggttcagctgcccctcacacccagagtatgcagggtttccctccaaatttg
ggttctgcattcagtacccctcagtcaccagcaaaagcatttccacctctttcaacccca
aatcaaacaacggcattcagtggtattggaggactttcatcacaacttccagtaagtggt
cttggcacaggaagcctgactggtataggaactgggggccttggacttcctgcagtgaac
aacgacccttttgtacagaggaaactgggcacctctggactcaaccagcctacattccag
cagagtaagatgaaaccttctgacttgtctcaggtgtggccagaggccaatcagcacttc
agtaaagagatagatgatgaagcaaacagctatttccagcgaatatataatcacccacca
catccaaccatgtctgttgatgaggtactagaaatgctacagagatttaaagactctact
ataaaaagggagagagaagtatttaactgtatgctgaggaacttgtttgaagaatatcgt
tttttcccccagtaccctgataaagaattacatataacagcctgcctgtttggtggcata
attgaaaaaggactggtcacttacatggcattaggtctggcccttcgatatgttcttgaa
gccttacggaagccttttggatcaaaaatgtattattttggtattgctgcactagataga
tttaaaaatagattgaaggactatcctcagtattgtcagcacttggcttctattagtcac
tttatgcagtttccacatcatttgcaggaagtaagtgccccgatctctaacattcgtcag
tacatcgagtatggacaacaatctcgagatcctcctgtgaaaatgcagggctctatcacg
acccctggaagtattgcactggctcaggcccaggctcaggcccaggttccagcaaaagct
cctcttgcaggtcaggttaatacaatggtaaccacctcaacaaccaccactgttgctaaa
acggttacagtcaccaagccaacaggagtcagctttaagaaggatgtgccaccttctata
aatacaacaaatatagatacattgcttgtggccacagatcaaactgagaggattgtagaa
cccccagaaaatatccaagagaaaatcgcttttatcttcaacaatctctcacagtcaaat
atgacccagaaggtggaagagcttaaagaaaccgtgaaggaagagtttatgccttgggtt
tcccagtatctagttatgaaaagagtcagtattgagccaaactttcatagcctgtattca
aactttcttgacacattgaagaatccagaatttaacaagatggttctgaatgagacctac
agaaacattaaagtgctgctgacctctgataaagctgcagccaatttctcagatcgttct
ttgctgaagaacttgggacattggctaggaatgatcacattagctaaaaataaacccatc
ttgcacacggacttggatgtgaaatctttgctgctagaggcttatgttaaaggacaacaa
gaattgctttatgtagtgccctttgttgccaaagttctagagtccagcatccgtagtctg
gtatttagaccaccaaacccctggacaatggcaattatgaatgtattggctgaattgcat
caggagcatgacttaaagttaaacttgaagtttgagattgaggttctctgtaagaacctt
gcattagacatcaatgagctaaaacctggaaacctgctgaaagataaagatcgcctgaag
aacttagatgaacaactctctgctccaaagaaagatgtcaaacagccagaagagcttcct
gccatcacaacgacaacaacttctacaacaccagctaccagtactacgtgtacagccaca
gttccaccacaaccacagtacagctaccacgacatcaatgtctattctcttgcaggcctg
gcaccgcacattactctaaaccctacaatccctttgttccaggctcatccacagttgaag
cagtgtgtgcggcaagcgattgaacgggctgtccaggagctagtccatcctgtggtagat
cggtcaattaagattgccatgactacttgtgaacagatagttaggaaggattttgccctg
gattctgaggaatctagaatgcgaatagcagctcatcacatgatgcggaacttgactgct
ggaatggctatgattacttgcagggagcctttattgatgagcatatctaccaacctaaaa
aacagttttgcctcagcccttcgtactgcatccccacaacaaagggaaatgatggaccag
gctgctgctcagttagctcaggacaattgtgaattagcttgttgttttattcagaaaact
gcagtggagaaagcaggccctgagatggacaagagattggcaactgaatttgagctgagg
aaacatgctcggcaagaaggacgcagatactgtgaccctgttgtattaacatatcaagcg
gaacggatgccagagcaaatcaggctgaaagttggtggtgtggacccaaagcagctagcg
gtttatgaagagtttgcacgaaatgttcctggcttcttacctacaaatgacttaagtcag
ccaacaggatttttagctcagcccatgaagcaagcttgggcaacagatgatgtagctcag
atttatgataagtgtattacagaactggagcaacacctacatgctattccaccaactttg
gccatgaatcctcaagcccaagctctccgaagtcttttggaggttgtagtattgtctcgg
aattctcgagatgcgatagctgctcttggattactgcaaaaggctgtagagggtttatta
gatgccacaagtggtgctgatgctgacctattgctgcgatatagggaatgccacctcttg
gtactaaaagctttgcaggatggcagggcatatggatctccatggtgcaacaaacagatc
acaaggtgcctaattgaatgtcgagatgaatataaatataatgtggaggctgtggagctg
ttaattcgaaatcatttggttaacatgcagcaatatgatcttcatctagctcagtcaatg
gagaatggcttaaactacatggccgtggcatttgctatgcaattggtaaaaattctgctg
gtggatgaaaggagtgttgcccatattactgaggcagacctattccataccattgaaacc
ctcatgaggattaatgctcattccagaggcaatgctccggaaggattgccccagctgatg
gaagtagtgcgatccaactatgaagcaatgattgatcgtgctcatggaggcccaaacttt
atgatgcattctgggatctctcaagcctcagaatatgatgaccctccaggcctgagggag
aaggcagagtatcttctgagggaatgggtgaatctataccattcagcagcagctggccgt
gacagtaccaaagcgttctctgcgtttgttggacaggtagagcttttggaaagaaagatg
caccaacaaggaatacttaagactgatgacctcataacaaggttttttcgtctttgcact
gaaatgtgtgttgaaatcagttatcgtgctcaagcggagcagcagcacaatcctgctgcc
aatcccaccatgatacgagccaagtgttatcacaacctggatgcctttgtccgactcatt
gcactgttagtgaagcactctggggaggccaccaacactgtcaccaagatcaatctgttg
aataaggttcttggtatagtagtgggagttctcctacaggatcatgatgttcggcagagt
gaatttcagcagcttccctaccataggatttttatcatgctgctgttggagctcaatgca
cctgagcatgtgttggaaaccattaatttccagactcttacagctttctgcaatacattc
catatcttaaggcctaccaaagctcctggctttgtatatgcctggcttgaattgatctcg
catcggatctttattgcaagaatgctggcacatacgccacagcagaaggggtggcctatg
tacgcacagctgttgattgatttattcaaatatttagcgcctttccttagaaacgtggaa
ctcactaaacctatgcaaatactctacaagggtactctaagagtgctgctagttcttttg
catgatttcccagagttcctttgtgattaccattatgggttctgtgatgtgatccctcct
aattgtatccagttaagaaatttgatcctgagtgccttcccaagaaatatgaggctccca
gacccattcactcctaatctgaaggtggacatgttgagtgaaattaacattgcacctcgg
atcctcaccaatttcactggagtgatgccacctcagttcaaaaaagatttggattcctat
cttaaaactcgatcccctgtcacttttctgtcggatctgcgcagtaacctacaggtatct
aatgagcctggcaatcgctacaacctccagcttatcaacgcactggtgctctatgtaggg
actcaggccattgcacacatccacaacaagggcagcacgccttcaatgagcaccatcacc
cactcagcacacatggacatcttccagaacctggctgtggacttagacaccgagggccgg
tatcttttcttaaatgcaattgcaaaccagctgcggtacccaaacagccacactcactac
ttcagctgcaccatgctgtacctttttgctgaggcaaacactgaggcaatccaggaacag
atcacaagggttctcttggaacggttgattgtaaataggccgcatccttggggtcttctt
atcaccttcattgagctgattaaaaacccagcatttaagttctggaaccatgagtttgta
cactgtgccccagagattgaaaaattattccagtctgttgcacagtgctgcatgggacag
aagcaggctcagcaagtgatggaagggaccggtgccagttag
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integrated database retrieval system
