Cricetulus griseus (Chinese hamster): 100762044
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Entry
100762044 CDS
T02813
Symbol
Pabpc1l
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
cge
Cricetulus griseus (Chinese hamster)
Pathway
cge03015
mRNA surveillance pathway
cge03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cge00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100762044 (Pabpc1l)
09123 Folding, sorting and degradation
03018 RNA degradation
100762044 (Pabpc1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cge03019
]
100762044 (Pabpc1l)
03041 Spliceosome [BR:
cge03041
]
100762044 (Pabpc1l)
Messenger RNA biogenesis [BR:
cge03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100762044 (Pabpc1l)
mRNA cycle factors
Stress granule specific factors
100762044 (Pabpc1l)
Spliceosome [BR:
cge03041
]
Complex C
Other components
Complex C specific factors
100762044 (Pabpc1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RBD_DEAH11
RRM_7
RRM_Nup35
RRM_3
RRM_occluded
xRRM
E2R135
Motif
Other DBs
NCBI-GeneID:
100762044
NCBI-ProteinID:
XP_027279279
UniProt:
A0A8C2QMR6
LinkDB
All DBs
Position
6:complement(15469462..15497114)
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AA seq
609 aa
AA seq
DB search
MDPGGQACALSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEMIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFS
TFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKRE
AELGARALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSNGQSRGFGFVNFEK
HEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQGVNLYVKN
LDDSINDERLKEVFSAYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGT
KPLYVALAQRKEERKAILTNQYRRQLSRPVLSSFQQPTNYLLSAVSQSTAQAVYYGSGSM
APMQPDPRWAVQPHGPSSTCPPAASVVQPLGTMQHPRVHLNNASQASSQVPHTQRVVNIG
TQTTGSGGEGCSIPGQPLLTHRGSSAVHSAHGVQEPAVYVPGHQPLTVSMLAAAPLHEQK
QMIGERLYSLIQDTCAPLTGKITGMLLEMDNLELLLLLESPESLHAKIEEAVAVLRAHQE
MESAKGNRN
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggaccccggtggccaggcctgcgcactctcttcactctatgtgggcgatctgcacccc
gatgtaactgaagctatgctctatgagatgttctcccccatcggcactattctgtccatc
cgcgtgtgtcgcgacgtggccacccggcgctccctgggctatgcctacatcaacttccag
cagcctgcggacgcggaaagggcactcgacaccatgaactttgagatgatcaaaggccag
cccatccgtatcatgtggtcccaccgagacccagggcttcgaaagtctggtatgggcaac
atctttatcaaaaacttggagaattccattgacaacaaggccctctatgacaccttctcc
accttcgggagcatcctctcttctaaggtagtatataacgaacacggatctcggggcttc
ggctttgtgcattttgagacccatgaggctgcccagaaggccatcaacaccatgaatggg
atgttgctgaatgaccgaaaagtcttcgtgggccacttcaagtctcgacaaaagcgggag
gcagagctgggggctcgggccctgggattcaccaacgtctacgtgaagaacctgcacatg
gacatggatgagcagggcctccaggacctcttctcccagtttggaaagatgcagagtgtg
aaggtgatgagagatagcaatggccaatccaggggcttcggctttgtcaactttgagaag
catgaggaagcccagaaggccgtggaccacatgaatgggaaggaagtgagagggcagctg
ctgtatgtgggccgggcccagaagcgggcagagcggcagagcgagctgaagcgcaggttt
gaacaggtgaagcaggagcggcagaaccgctaccagggtgtaaacctttatgtaaagaac
ttggatgactccattaatgatgagaggttgaaggaagttttctctgcctatggagtgatc
accagtgccaaggtgatgacagaaagtagccacagcaagggctttggctttgtctgcttt
tcctctccagaagaggcaacaaaggctgtgacagagatgaatgggcgcatcgtgggcact
aagcctctgtatgtggccctggcacagcgcaaggaggagcggaaggccatcttgaccaac
cagtataggcggcagctctctcgccctgtcttgagctccttccagcagcctaccaactac
ttactgtctgctgtatcccagtctacagcacaggctgtgtactatggttctggctccatg
gctccgatgcaacctgaccccaggtgggcagtccagccacatggaccgtcgtctacctgc
cctccagctgcctcagtggtgcagcctctaggcacgatgcagcacccccgcgttcacctc
aacaatgccagccaggcctccagccaggtgcctcacacacagagagtagtcaacattggt
acccagactacaggatcaggtggggagggatgctctattccaggtcaacctctcctgacc
catagaggatcttcagctgtacacagtgcccatggggtccaggagccggctgtgtatgtc
cctggccatcagcctctgactgtgtccatgctggctgctgcgcccctgcatgagcagaaa
caaatgattggggagcgtctctactccctcatccaggacacctgcgccccactgactggc
aagatcacgggcatgctgctggagatggacaacctggagcttctgttattgctggagtcc
ccagagtccctccatgccaagatagaagaggctgtggcagtgttgcgggcgcatcaggaa
atggagtcagccaaaggcaacaggaactga
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