Cricetulus griseus (Chinese hamster): 100762383
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Entry
100762383 CDS
T02813
Symbol
Vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X4
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
cge
Cricetulus griseus (Chinese hamster)
Brite
KEGG Orthology (KO) [BR:
cge00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cge04131
]
100762383 (Vps13a)
Membrane trafficking [BR:
cge04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
100762383 (Vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Mer2
Motif
Other DBs
NCBI-GeneID:
100762383
NCBI-ProteinID:
XP_027262378
UniProt:
A0A9J7FLN3
LinkDB
All DBs
Position
3:44321955..44495345
Genome browser
AA seq
3166 aa
AA seq
DB search
MVFESLVVDVLNRLLGDYVVNLDKSQLSLGIWKGAVALKNLQIKENALSELDVPFKVKVG
HIGSLKLKIPWKYLYTQPVEAVLEEIYLLIVPSSRIKYDPIKEEKHLMEAKQQELKRIEE
AKQKVVDQENPPEEKQDTFTEKLITQIIKNLQVKISNIHVRYEDDITNQGKPLSFGISLQ
NLSMQTADQNWIPCLHDETMKLVRKLLRLDNLFAYWNVKSEMYYLNDYDESLEALRNGIV
NENIVPEGYDFVFRPISANAKLQMNRRSDFDFSEPKINLAVELHTIVLELNKPQYFSLME
LLESVDMMSQNLPYRKFKPDVPLHYHAKEWWAYAIYGILEVNVIPHLRMWSWKHIRDHRQ
KIKKYREFYKKKLTSKKPSPEILMSLEELEKTLDVFNITIARQQAEVEVKKAGYKIYKGG
TKDPEDKAGWFSWLWTWSESDAKQQLEVKPGILEEMLTPEEKVSLYEAIGYSETAVDPTL
PKTFEALKFFVHLKSMSIILRENHQKPELVDIVVEGLSTSIVQRPGAQAIKFETKIDAFH
ITGLPDNSKKPHLLSSLDDMSLFQITFETNPLDETVAQRCVIEAEPLEIIYDARTVNSIV
DFFRPPKDVHLAQLTSATLTKLEEFRDKTAAGLLYIIETQKVLDLRINVKASYVIVPQNG
IFSPTSNLLLLDLGHLKVTSKSRSGLPEMKTSGASLEEIMHKAYDSFDIHLTSIQLLYSR
MGDNWKEARKLNVSTQHILTPMHVNVELSKALVFMDIKMPKFKISGTLPLVSLRISDKKL
QGIMELFESIPKPEPITDVSAPARSFQNQASTSLPVSHISQKLIPLLEQPCHSENDSEEE
FFDAPCSPLEARSQTVCRGKSSRQKKDCLMNLTQLGMRFEVAEVLIQFYHLVGDCELPVL
ETGALGLGTEVEIRTFDLQANAFLKELWVKCPEYLDEYKKPIYLVTTLDNTMEDLLTLEF
VRAEKNAPNLKSTYNNVLQLIKVNFSSLDIHLHTEALLNTMNYLNNILPQLGEQSVPVSV
AETEDKGDIIKKLALKLPTNEDIITLQLLAELSCLRIFIQDQKQNISEIKIEGLDSEMIM
KPLVTETNAKLRNIIVLDSDKMAIYKKAVYITGKEVFSLKMISYMDATAGSAYTDMNVVD
VRVNLTVGCIQVVFVTKFLYSILAFIDNFQEVKNALAEATAQAAGMAADGVMELARRSSR
FALDVNIKAPVVVIPQSPLSHNVFVADFGLITMKNTFVTITETQSNLPPVIDLITIKLSE
MRLYRSQFMNDGYQEVLDLLLPLNLEVIVERNLSWEWYKEVPCFNVKAHLKPMEFILSQE
DLTTIFQTLYGNIWYERDVYVQSNVNKDQEIVTGGTTGVSYHLGASTVVTAAVVEVHPQA
SPVNTTLNLSFKTDYLTMALYSPGPEQAFFTDVRDPSLELAEFKLENIISSLKMYTDGST
FSSFSLKNCVLDDKRPHVMKATPRMIGLTLGFDKKDMVDVKYRKIRDTCVTDAVVQEMYV
CASVEFLMTVARVFFDAYMTGSELETNVQTWTTKEAPVQGSETYEINILIKNPEIVFVAD
MTRNDAPALVITTQCEICYKSDTDNNTMTAAIKDLQVQACPFLPVKRKDKITTVLQPCDL
FYQATQIGTDPQMIDISVKSLTLKVSPVIINTIITITSVLYTTKETIPEEKTSSIAHLWD
KKDTKNLKMWFLEESNETEKVVPTSELMPGGETLNLNIDSIFIVLEAGIGHRTVPMLLAK
SRLLGESKNWSTLINLHIQLELEVHYYNEIFGVWEPLLEPLEIDQTDDFRPWNLGIKMKK
KAKESIVESDSEEENYRVPEYKTVIGFYSKDQLNITLSKCGLVMLNNLVEAFTEAATGSS
AVFLRDLAPFMILNSLGLTVSVSPSDSFNVLNVPLAKSYELKDKESLSMDYVRTKDSDHF
SAMTSLSSRLFFILLTPVNHSAADKIPLTKVGRRLYTVRHRESGVERSIVCQIDMFEGSK
KVTIRSPVQIKNHFSIPISVFEGDTLLGIASPENEFNIPLESYRSSLSLKPEDEDYQMCE
GIDFEEIIEYDGQLLKKKCRSIYPSKKSFVINIVPEKDNLTSLSVYSEDGWDLPYVIHLW
PPILIRNLLPYKIAYYLEGIENTVFNLSEGHSSQIYNVEMDKAKLHLKLLDYLNHDWKSE
FHIKPNQQDISFINFTCLTEMEKTDLDIAIHMTYNTGQTIVAFHSPYWMVNKTDRMLQYK
ADGIHRKHPPNYKKPVLFSFQPNHFFNNNKVQLMVTDSELSDQFSIDTVGSHGAIKCKGL
KMEYQVGVTINLSSFNITRIVIFTPFYMIKNKSKYHISVAEEGSDKWLSLDLEQCIPFWP
ETASNILLIRVERSEDPPKRIHFNKQESCILLRLNNELGGIIAEVNLAEHSTVITFSDYH
DGAATFLIINHTKNDLVQYKQSSLNEIEDSLPPGKAVYYTWADPVGSRKLKWSCGQSYGE
VTHKDDMMTPITVGKKTIYLVSFFEGLQRIILFTEDPKVFKVTYESEKAELAEQEIVLAL
QDVGISLVNNYTKQEVAYIGITSSDVVWETKPKKKARWKPMSIKHTEKLEKEFKEYTESS
PLEDKVIELDNNIPVRLTPSGNDMKVLQPHVIAVRRNYLPALKVEYNTSAHQSSLRIQIY
RIQIQNQIHGAIFPFVFYAIKPPKSVTMDSAPKPFTDVSIVMRSAGHSQISRIKYFKVLI
QEMDLRLDLGFVYAIADLIPKAEVTEKTEVEYFNKDVETFEQEYETVSSVDQSQINLFEY
FHISPIKLHLSVSLSSGREEAKDSGQRGGLIPVHSLNLLLKSIGATLTDVQDVVFKLAFF
ELNYQFRTTSELQSEVIRHYSKQAIKQMYVLILGLDVLGNPFGLIREFSEGVEAFFYEPY
QGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITSAMAKGVAAMTMDEDYQQKRREA
MNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVAR
PTGGIIDMASSTFQGIKRATETFEVESLRPPRFFNEDGVIRPYRLRDGTGNQMLQVMENG
RFAKYKYFTHVMINKTDMFMITRRGVLFVTKGTFGQLTCEWQYTFDEFTKEPFIVHGRRL
RIEAKERVKSVFHAKEFGKIINFKTPEDARWILTKLEEAREPSPSQ
NT seq
9501 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgagtcgttggtcgtcgacgtgttgaaccggttgctgggggactatgtggtg
aacctggacaagtctcagctctctctgggcatttggaaaggagctgtggccctgaagaat
cttcaaattaaagaaaatgcattgagtgaactggatgtaccattcaaagttaaggttggt
catataggtagtcttaaacttaaaattccatggaagtacctttatactcaaccagttgaa
gctgttttggaagaaatctatttactcatagtgccttcttctagaataaaatatgatcct
atcaaagaagaaaagcatctcatggaagcaaagcaacaggaactaaaaagaatagaagaa
gcaaaacagaaagtagttgatcaagaaaatcctccagaggagaaacaggacactttcaca
gaaaaattaattactcaaatcataaaaaaccttcaagtgaaaatttccaatatccatgtt
cgttatgaagatgatatcacaaatcaaggcaaaccactctcatttggtatatcccttcaa
aatctcagcatgcagacagctgatcaaaattggattccatgtttacatgatgaaactatg
aaactagttcggaagctactccgattagataatctctttgcttactggaatgtgaagtct
gagatgtattatctgaatgattatgacgaatcattggaagccttgagaaatggtattgtc
aatgaaaatattgttccagaaggttatgattttgtttttcgacctatatctgctaatgcc
aaacttcagatgaaccggcgatcagattttgacttttctgaacccaaaataaacctggct
gttgagttacataccatagtgcttgagcttaataaaccacagtatttcagtctcatggag
ctccttgagtcagttgacatgatgtcacaaaacctgccatacagaaaattcaagcctgat
gtgcctcttcactatcatgccaaagaatggtgggcttatgctatttacggtattcttgaa
gtaaatgttattccccatttacggatgtggtcatggaagcatattagagaccatagacaa
aaaatcaaaaaatacagagaattttataagaagaaattaacaagtaagaagccatctcct
gaaattctcatgtctttggaggagctggagaaaaccttggatgtttttaatataaccata
gctagacaacaagcagaagttgaggtaaagaaagctggatacaagatttacaaaggagga
acaaaagatcctgaggataaggcaggatggtttagctggctgtggacttggtcagaatca
gatgctaaacaacaactagaagttaaacctggaattcttgaagaaatgttgacacctgaa
gaaaaagtttcactttatgaagcaattggttacagtgaaacagcagttgatccaaccttg
ccaaaaacatttgaagccttgaagttttttgttcacttgaaaagtatgtctattattcta
agagaaaatcaccaaaagccggagctggtagacattgtagtagaaggacttagtacttcg
attgtgcaaagaccaggagcacaagccataaaatttgaaaccaaaattgatgcattccat
attactggtttaccagataattcaaaaaaaccccacctattgtcttcattggatgatatg
tccctcttccagattacatttgagaccaaccctttagatgaaactgttgctcagaggtgt
gtcatagaggctgaacctttagagataatatatgacgcgaggacagtcaatagtatagtg
gatttcttcagacctccaaaagatgtccacctagcacaactcacttcagcaactttgaca
aaacttgaagaatttcgagataaaacagcagcaggtttattgtatattattgaaacacag
aaagttcttgatctcagaattaatgtgaaggcttcatatgttattgtcccacaaaatgga
atttttagtcctacatcaaatctacttctcttggatcttggtcatctaaaggtgacaagt
aaaagtcgatcaggattaccagaaatgaaaacaagtggggccagccttgaagagataatg
cataaagcttatgattcttttgatattcaccttacaagcatacagttgctttacagcaga
atgggtgataattggaaagaagcacgaaagctcaatgtatctacacagcatattttgaca
ccgatgcatgtcaatgtagaactctctaaagccttggttttcatggatatcaagatgccc
aagttcaagatttctggaacattgcctcttgtttcattacgaatctcggataaaaaactt
caagggattatggaattgtttgaaagcattccaaaacctgaacccataactgatgtatct
gcccctgccagatcattccagaatcaagcatctacttctttgccagtatcacatatttct
cagaagttaatccctttattggaacagccttgtcattctgaaaatgactcagaggaggaa
ttttttgatgcaccatgtagtcccttggaagctcgttctcaaactgtatgtagaggtaaa
agttctcgacaaaaaaaagattgtttaatgaatttaactcaacttgggatgcgatttgaa
gtagcagaggttttgattcagttttatcaccttgtgggagactgtgaactacctgtgcta
gaaacgggtgctttaggattgggtacagaagttgagattagaacatttgatttgcaagca
aatgcctttttgaaagagttgtgggtaaaatgtccagaatacttagatgaatacaagaaa
ccaatttatttggtcaccaccctggataacacaatggaagatttgttaacattggaattt
gtaagggctgaaaaaaatgcacccaatttaaaaagtacctataacaatgttttacaactt
attaaggtgaatttctcctctttggatattcatttgcacactgaagcacttctcaatacc
atgaattatcttaataatatccttccacaattaggggaacaatctgtcccagtgtctgtt
gcagagactgaagacaaaggagatatcattaaaaaacttgctttaaagctacccacgaat
gaagatattattaccttacagctattggcagaattatcttgtttacggatttttattcag
gatcagaaacaaaacatttctgaaattaagattgaaggacttgattctgagatgattatg
aagccattagtcactgaaacaaatgcaaaactaaggaatataattgtgttggattctgat
aaaatggctatatacaaaaaggctgtttatatcactggaaaagaagttttcagcttaaaa
atgatttcttacatggatgccactgctggatctgcatacacagatatgaatgtggttgat
gttcgagttaatttaactgttggttgcattcaagtagtgtttgtcacaaaattcctatat
tctatattggcttttatagataattttcaagaagttaaaaatgccttggctgaagcaact
gctcaagcagcaggaatggctgctgatggcgtaatggaactggctagaagaagttctagg
tttgcactggatgttaacatcaaagctcctgttgtggtcatcccacagtctccattgtct
cataatgtttttgttgctgattttggattaattacaatgaaaaatacatttgttactata
acagaaacccagagtaatctcccacctgtaattgatttgataacaataaagttaagtgaa
atgagactatacaggtctcagtttatgaatgatggataccaggaagtgctggacctgcta
ctacctttgaacctggaagtgattgttgaacgaaatttatcatgggagtggtacaaggaa
gttccttgttttaatgtaaaagcccatctaaaacccatggagttcattcttagtcaagaa
gatttaacgacaatttttcaaacattgtatggcaatatatggtatgaacgagatgtttat
gtccaatctaatgtaaataaagaccaggagatcgtgactggtggaacaaccggtgtttcc
taccatttgggagcatctactgtggtgacagctgctgtggtggaggtacacccacaggca
tctccagttaacacgacactaaatctgagtttcaaaactgattatctcaccatggcactt
tacagtccagggcctgaacaggccttctttacagatgttcgtgatccttctctggaactt
gctgaatttaaattggagaatattataagtagtttaaaaatgtatacagatggctctaca
ttctcttctttctcattaaaaaactgtgttttagatgataaaaggcctcatgtcatgaaa
gccactcctagaatgataggactgacacttgggtttgacaaaaaggacatggtggatgta
aagtatagaaaaatcagagatacttgtgtgactgatgcagttgtccaagagatgtatgtt
tgtgcaagtgtggagtttctgatgactgttgcacgtgtcttttttgatgcctacatgact
ggttcggaattagaaaccaatgttcaaacatggactactaaagaagcacctgtacagggt
tcagagacgtacgaaataaatattcttataaaaaaccctgagattgtgtttgtggctgat
atgacaagaaatgatgctcctgccttagtcattacaacacagtgtgaaatttgctataaa
agtgacactgacaacaatacaatgactgctgccattaaagatctccaagtccaagcatgc
ccatttcttccagtcaagagaaaggacaaaatcaccactgttttacagccttgtgactta
ttttatcaggctactcagattggaacagatccacaaatgattgacatatcagtaaaatct
cttacactaaaggtttcaccggttatcataaataccataataactattacttctgtgctt
tatacaactaaagaaaccatcccagaagaaaagacttcttctatagcacatttatgggac
aagaaggatactaagaatctgaaaatgtggtttctagaggaatcaaatgaaacagaaaaa
gtagttcccacaagtgaattgatgccaggaggagagacactgaacttgaatattgattct
attttcatagttctcgaagctggaattggtcatagaacagtgccgatgctattggcaaag
tcacgccttttgggggaaagcaaaaactggagtactttaataaatctccacattcagctt
gagctggaagttcactattacaatgaaatatttggtgtttgggaacctttactggaaccc
ttagaaattgatcagactgacgattttagaccatggaatcttggaatcaagatgaaaaag
aaagcaaaagagtccattgttgagtctgatagtgaagaagaaaactacagagtaccagaa
tataaaactgtcataggtttttattctaaagaccaattaaacattacactatctaaatgt
ggccttgtgatgttaaataatttagttgaggcatttactgaagctgctactggatcttca
gctgtcttcctaagggatctagcaccatttatgattttaaattctcttggacttactgta
tctgtttcaccaagtgattcttttaatgtactcaatgttcctttggcaaaatcatatgaa
ctgaaggataaagagagtttaagtatggattatgtacgaactaaggacagtgatcatttc
agtgcaatgaccagcctaagcagcagactcttcttcattctacttacgcctgttaaccac
tctgctgctgataagattcctttaacaaaagtgggacggcgtctgtacacagtaagacac
agagagtctggagttgaaagatctatcgtttgtcaaattgacatgtttgaaggaagtaag
aaagtaacaatccgctccccagtgcagattaagaatcatttttcaatcccaatttccgtt
tttgagggggatactttattgggaattgcttcacctgaaaatgaattcaacataccttta
gaatcttacagatcatccctttctttgaagccagaagatgaggactatcagatgtgtgaa
ggaattgactttgaagaaatcatagaatatgatggacaacttctaaagaagaaatgtaga
tctatatacccttctaagaaatcgtttgttattaatattgttccagaaaaagataatttg
acttctctgtcggtatattcagaagacggctgggacttaccatatgtaatacacttgtgg
ccacctatcctcattcggaatcttcttccctacaaaattgcttattatttagagggcatt
gaaaacacagtttttaatctaagtgaaggacattcatcacagatttataatgttgaaatg
gacaaagctaagctgcatttaaagttgcttgactatcttaatcatgactggaaaagtgaa
tttcatataaaacctaatcaacaagacatcagtttcatcaactttacctgtctcacagaa
atggaaaagactgatttggatattgctatccatatgacttacaatactggtcagacaatt
gttgcatttcatagtccatattggatggtcaataaaactgatcggatgttacagtacaaa
gcagatggaatacaccgaaagcatccacctaattataaaaagccagttctcttttccttt
cagccaaatcacttttttaacaacaataaggttcagcttatggtaaccgatagtgagctc
tctgatcagttttcaattgatactgttggtagtcatggagccattaaatgcaaaggtctg
aaaatggaataccaagttggtgttactataaacctcagcagttttaacattactagaatt
gtgatatttactcctttttatatgattaaaaacaaaagcaaataccatatatcagtggct
gaagaaggaagtgataaatggctctctcttgacttagagcagtgtatccccttttggcct
gagactgcctccaatattcttcttattcgagttgaaaggagtgaagatcctcccaaaagg
atacattttaacaagcaagaaagttgtattttattgcgactgaataatgagcttggagga
attattgcggaagttaatttggctgagcactctacagttatcacattttcagattaccat
gatggagcagctacattcctaataataaatcatactaagaatgaccttgttcagtacaag
caaagttctctcaatgaaatagaagattcccttcctcctggaaaagcagtatattataca
tgggctgatccagtgggctctcgaaagctgaagtggagttgtgggcaaagctatggtgaa
gtaacacataaggatgatatgatgacacctataactgtggggaaaaaaactatttattta
gtttcattctttgaaggcttgcagcgtattattttattcactgaagatccaaaagtgttt
aaagtaacgtacgaaagtgaaaaagcagagttagcagagcaagaaattgtattggcatta
caagatgttgggatttcacttgtcaataattacacaaagcaagaagtagcctatataggc
attacaagttctgatgttgtttgggagacaaaaccaaagaaaaaggcaaggtggaagcca
atgagtataaaacacactgagaagctggagaaggaattcaaggaatacacagagtcttca
cctttggaagacaaggttattgagttggacaataacattccggttcgcttaacacctagt
ggcaatgacatgaaagttctgcaaccacatgtgatagctgtacggagaaattacctccca
gcactaaaagtagaatataacacatcagcacaccagtcgtcattgagaattcagatttat
agaatacagatccaaaaccagattcatggtgctatttttcctttcgtgttttatgctatt
aaacctccaaagtctgtcacaatggactcagcaccaaagccctttacagatgttagtatt
gttatgagatctgcaggacattcccagatatcacgcattaagtatttcaaagtgttgatt
caagaaatggatctcagattggatcttggatttgtgtatgccatagcagaccttattcca
aaagccgaggtgactgagaaaacagaggttgaatattttaataaggatgtagaaacgttt
gaacaggaatatgaaacagtttcatcagtagatcaatcccaaatcaatctctttgaatat
tttcatatatctcctatcaagttgcatttgagtgtttcactgagctctggaagagaagaa
gctaaagattcaggacaacgtggaggactaattcctgttcattctctcaatcttttgctg
aagagtattggtgccacccttacagatgtacaagatgtagtttttaagcttgcctttttt
gaactcaactaccagttccgtacaacatctgaactgcaatctgaagtaataagacactat
tcaaaacaggctattaagcaaatgtatgtacttattcttggacttgatgttttgggaaat
ccctttggcctaattagagagttttcagaaggcgtggaagcatttttttatgaaccttac
cagggggccatccagggtcctgaggagtttgtggaaggaatggcactaggactgaaagca
ctggttggcggagcagttggtgggctagctggtgctgcctccaaaatcaccagcgctatg
gctaaaggggtagcagccatgacgatggatgaagactaccagcagaagagaagagaagcg
atgaataagcaaccagctggccttagagaaggcattactcgtggaggaaaaggcctggtt
tctggttttgtaagtggcattacagggattgttacaaaaccaattaaaggtgctcaaaag
gaaggagcagcaggtttcttcaaaggtgttgggaaaggtttagttggagcagtggcaaga
ccaacaggtggcatcatagacatggccagcagtacctttcaggggatcaaaagagctaca
gagacttttgaagtagaaagtctgagacctcctcggttctttaatgaagatggagttatc
cgaccttacaggctgagggatggtacaggaaatcaaatgttacaggtcatggaaaatgga
agatttgcaaaatacaagtattttacccatgtcatgatcaataaaacagatatgttcatg
ataacaagacgtggtgtgttgtttgtaacaaaaggaacatttgggcagctgacatgtgaa
tggcagtatacttttgatgaatttaccaaagagccatttattgtccatggaagaagattg
cgcattgaagcaaaggaacgggtgaaatctgtattccatgccaaagaatttggaaaaata
attaacttcaagactccagaggatgctaggtggatccttacaaagctggaagaagcaagg
gaaccatctcctagccaatga
DBGET
integrated database retrieval system
