Cricetulus griseus (Chinese hamster): 100763725
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Entry
100763725 CDS
T02813
Symbol
Setx
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
cge
Cricetulus griseus (Chinese hamster)
Pathway
cge05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
cge00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
100763725 (Setx)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cge03021
]
100763725 (Setx)
Enzymes [BR:
cge01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100763725 (Setx)
5.6.2.5 RNA 5'-3' helicase
100763725 (Setx)
Transcription machinery [BR:
cge03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100763725 (Setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
AAA_30
UvrD-helicase
nSTAND3
AAA_22
ResIII
AAA_16
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
100763725
NCBI-ProteinID:
XP_027278889
UniProt:
A0A9J7G7R5
LinkDB
All DBs
Position
6:140796033..140851542
Genome browser
AA seq
2690 aa
AA seq
DB search
MSTCCWCTPGGTSTVDVLKCYASSTGSSEFQTADEDLCYCLECVAEYHRARDEVPFLHEV
LWELETLRLINHFEKSMKAEVEDDELYIVDNNGEEQLFDCSGQDFENKLRVPLFEILKYP
YLLLHERVNELCVEALCRMEQANCSFQVFDKYPGIYLFLVHPNEMIRRWAILTARNLGKV
DRDDYYDLQEVLTCLFKVIELGLLESPDIYTSSVLEKGKLILLPAHMYDTTNYKNYWLGI
CMLLTILEEQAMDSLLLGSDKQNDFMQSILHTMERQSDDESMDPFWPALHCFMVILDRLG
SKVWGQLIDPIEAFQTIINNVSYNREIQNIRNSSIRTKLEPEPHFDDMVTCSQIVYNYNP
EKTKKDSGWRSAICPDYCPNMYEEMETLANVLQSDIGQDMRVHNSTFLWFIPFVQSLMDL
KDLGVAYIVEVIHHLYSEVKDVLNQTDAVCDKVTEFFILILVSVIELHRNKKCLHLLWVS
SQQWVEAVVKCAKLPTTAFARSSEKSSGSIPKGAAIISSLALHSVPSNSVQLACVQLIRG
LLKEGYQLGQQTLCKRFWDKLNLFLRGNLSLGWQLTAQETHELQMCLKQIIRNIKFKMPQ
YSTFGDLTSTCKTPPSFKEESEQIDRKPKKDMYCLENFSPTCSKEPLKADSNQVLMKANN
TEEEGIKQHYIGLNEEEEPLPAELCLKQKSEALFSGSAQEQVQISTEKSVTENSSFTPQN
NTIRNGSEWGYDRGVIISTRSLTDSSTDSLEKVSTSNEDVSLKDDTVGKNSKPKSKAQKD
EICAKLSHVIKKQHRKSTLINNTVILEENTAMSDLENCSEKDREVLKEDAVTHDVSSDPV
LDDEHEEQNSENSSKKQLKSEESYNSDKSKCQIQEHHATDDLLSFTEVTNTLVKKTSCED
PVKVVVESRDKEIRKSTVLISNLVKGQVPHGSSKPLVTGSQTDLCNITSVAQTTVIQFPT
GTSKSPSQLQRKDDRCLTANQNSADTCHGQIIVISDSDEDDDERSHGIEKHTQKDKVCTE
KECPEQHGLVVNTGVEKKLIKEEETKFSVEFEDSESQVFEFESSSEVYSVWQDHKVDSKN
FLQEEGKSCVTHVADSTNNNLGCGADSVSEEIARNEAEDVEEHAEPHSSVSAEEFCKTGG
KQHKRKRCDRVTVEDPQRPSSSVRPEQLADDRDLAGIDTGTSASSSRVERDSTLSPMKST
KPRTHPKPVRKVPASKAIKKTHSDTKRGQNKSSCYISCRTSPAIVPPKKFRQCPEPTSTV
EKLGLKKAPRKAFELSQRSLECIVQLRDHGKTVGVVDAPKKTKLIPPPTLSIKNNKKLLT
SQDLQFQRLMRSRSHQKRDLDYKNTDTARTVPRTVQGSDVPVPDSDGPDNRGSEPPANSN
EKQLAKCMPSKLEVAKAISDPRVTDIASLVNQCESRVLSGGVPTDVIFASEDPVGEDAPT
LPFGEVAAVKAAEPESSSDTDDDNLFLTQHDPQDMDLCSQMENNKLIVVTHKDAIQRDDS
VNQPQLVESLSVTKCKYKDCVETTKNQGEYCPRHSEAKAADDDVFRKPGLPLSVARPLRP
TTTKIFSSSSASRTANFSKSLESTILQSALKNKSSGAQPNLKVTPPSSIVSQKPVAEVKS
LCNIFNFQTPSSSSKRSYKLTLSDSKPVSASSAVNILLPSQSIFDTFIKEVLKWKYQMFL
NFDKCGAPPSLSQSISRPVPVRFQDCAEYFNVFLPLIILNAFETVAQEWFNSPNKENFYH
LHLRKFPADYKKYWEFMIYLEESELAKQLHPKENDLVFLVPERLNREKKDMNRNGMQDRN
GYYCGYVHKFRRTSVMRSGKAECSLCIQTQDNLPVRLNEFMKCIVISSLVTTQRKLKAMS
LLSSRNQLARAVLNPNPMDFCTKDLLTTTSERIITYLKDFNEDQKKAIETAYAMVKHSPS
VAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENFNAKIKQNRVLVCAPSNAAVD
ELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKSINTEVLKFSLDSQVSHRMKKDLP
SHIQEMLRKKEFLDGQLDELSRQRALCRGGREMQRLELDGCIVKVSKERQELASKIKEVQ
GRPQKTQNTIILESHVICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEVETLSP
LIHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMARFCKLLEENVEQNMIGRLPILQL
TIQYRMHPDICLFPSNYVYNKNLKTNRMTETIRCSSEWPFQPYLVFDVGDGSERRDNDSY
INVQEIKLVMEIIKLIKDKRKDISSRNIGIITHYKAQKTMIQKDLEKEFDKKGLLQPIMI
GESRQQDPEASSQKKKSSECMHTSDELDFSTFTQSGVSCIENGVTHTGPAEVDTVDAFQG
RQKDCIIVTCVRASAVQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWYELIQ
DAQKRGAIIKTCDPNYRHDAMKILKLKPVLQRSLTHPPATAPEAPRPQGGLPSNKLDSGL
AKTSFAASLYHTPSDAVTKEPERPPLQDRLRDPRLLRRLDAEAKGTLLKNAQPLNSQLPG
LVHLLGESGIPLFLHDLSFIVPPSTAIVAPMNSHRSPLQAEPPPAHPAAPSTSKRKYSDR
DSGFSHRRESRDFSEEERRGSVTHHMLRSTDWNRRRLEQEDSSAKKRRFL
NT seq
8073 nt
NT seq
+upstream
nt +downstream
nt
atgagcacctgctgttggtgtactccaggtggtacttccaccgttgatgttctgaagtgc
tatgcatctagcactggatcgagtgaatttcaaacagctgatgaagacctctgctactgc
ttagagtgtgtggctgagtaccacagagccagagatgaggtgccgttcttgcatgaggtt
ttatgggaactagaaaccttacgcctcataaatcactttgagaagtctatgaaggcagaa
gttgaagatgatgaattatatatagtagacaacaatggagaagaacagctatttgactgt
agtggccaagattttgaaaataagcttcgagttcctctttttgaaatactgaagtaccct
tatttgcttcttcatgagcgtgttaatgaactgtgtgtggaagcactttgtcgaatggaa
caagccaattgctcctttcaggtttttgacaagtatccagggatctatttgtttttggtt
catcccaatgaaatgattcggcgatgggctattctgactgcaagaaacctagggaaagtg
gacagagatgactattacgacttacaggaagttttaacttgcctttttaaagtcattgag
ttggggcttttggaaagtccagacatttacacatcttctgtgcttgaaaaaggcaaactg
atccttctacctgcacacatgtatgatactaccaactacaaaaactactggctaggtatt
tgcatgttgctgactattcttgaggagcaagccatggattcactgttgttgggctcagac
aaacaaaacgattttatgcaatcaatccttcataccatggagaggcaatcagatgatgaa
agcatggatcctttctggccagcattacactgtttcatggtgattctagatcgccttgga
tctaaggtgtggggtcaacttattgaccctattgaagcatttcaaaccatcattaacaat
gtgagctacaatagagagatccaaaatatacggaacagctctataaggaccaaattagaa
ccggagccacattttgatgatatggtgacgtgcagccagattgtctataactataatcct
gaaaagactaaaaaggattcagggtggagatcagccatttgtccagattattgtcctaac
atgtatgaagaaatggaaacattagccaatgtacttcagtcagatattggtcaagatatg
cgtgttcataacagtacctttctgtggttcataccttttgttcagtcactcatggatctt
aaggatttgggtgtggcttacattgttgaagttattcatcatctatactctgaagtcaaa
gatgtcctcaaccagacagatgctgtgtgtgacaaagtcactgaattttttattttgatt
ttagtatctgtgattgaactgcatagaaacaaaaaatgtttgcatctgctatgggtgagt
tctcagcaatgggtagaagctgttgtgaagtgtgccaagcttcctactactgcatttgca
cggagttctgagaagtcatctggaagtatcccaaagggagcagcaataatatcatcattg
gcattgcattctgtgccctctaactctgtccagcttgcttgtgttcagttgattaggggt
ctcctgaaagaaggttatcagcttggccagcaaacactttgtaagcggttttgggataaa
cttaacttattccttagaggaaatttatctctgggttggcagttgactgctcaagaaacc
catgagttacaaatgtgcttgaaacaaataattagaaacataaaattcaaaatgccccaa
tatagcacttttggggatctgacttctacatgtaaaactcctccatcttttaaagaagaa
agtgaacaaatagacaggaagcctaaaaaagacatgtattgcctggaaaattttagcccc
acatgttctaaagaaccgttgaaagctgacagcaatcaagtattgatgaaagcaaataat
acagaagaggagggcattaagcagcattacattggtttgaatgaagaagaggagcctctt
ccagctgaattatgcttgaagcagaagagtgaggccctattttctggaagtgctcaagag
caagttcagataagtacagagaagtcggtaacagaaaattcttcatttacaccacaaaat
aatactataagaaatggctcagaatggggatatgatagaggagtaataatatcaacacgt
tcattgactgattctagcactgactctctggaaaaagtatctacgtcaaatgaagatgtc
tcattaaaggatgacactgttggtaaaaactcaaaaccaaagtctaaagcacagaaagat
gaaatttgtgcaaagttatcacatgtcataaagaagcaacataggaaaagtactttgatc
aataacactgtcattctagaggaaaacacagctatgtctgaccttgagaactgttcagaa
aaagatagagaagttctaaaggaagatgctgtcacacatgatgtgtcttcagaccctgtt
ctggatgatgaacatgaagagcaaaattctgaaaacagttcaaagaaacagttaaaaagt
gaggagtcatacaattctgataaaagcaagtgtcagatccaggaacaccatgcaactgat
gatttgctatcatttacagaagttaccaatacattggtaaagaaaacttcatgtgaggat
cccgtgaaggttgtagttgaatcaagagataaggaaataagaaagagtacagtgctgatt
tctaacttggtaaaaggacaggtgcctcatggcagtagcaagcctttggtaacaggttct
caaacggacctctgtaacataacttcagtagctcaaactactgttattcagtttccaaca
ggtacaagtaaaagtccatcgcagctacaaagaaaagatgatagatgtttgacagctaac
caaaacagtgctgacacctgccacgggcagattattgttatttcagattctgacgaagat
gatgatgaaagaagtcatggtattgagaaacacacccaaaaggacaaagtgtgcacagag
aaagaatgtccagagcagcatggtttggtagttaatactggtgtggaaaagaaacttata
aaggaagaagaaacaaagttctctgtagaatttgaggactccgaatctcaggtttttgag
tttgaaagttcttctgaagtgtattcagtttggcaagatcataaagtagacagcaagaac
ttccttcaagaggaaggaaaaagctgtgtaactcatgtagctgatagtacaaacaataat
ttgggttgtggtgcagactctgtgtctgaagagattgctagaaatgaagcagaggatgtt
gaagagcatgcagaaccacacagtagtgtttctgctgaggaattttgtaaaactggagga
aaacaacataagagaaaaagatgtgacagagttacagttgaagatccccaaaggccttca
tcttctgtcagacctgagcaattggctgatgacagagatcttgctggaatagacacaggg
acatcagcttccagttcaagagttgagagagattctacactttcaccaatgaagtctaca
aagcctcgtactcacccaaaacctgttaggaaagtaccagcttctaaggctattaagaaa
actcattcagacaccaagagaggacagaataagagttcatgttacatcagttgtagaaca
tctcctgctattgtgcctccaaagaaatttcgtcagtgtccagagccaacttcaacggtt
gaaaaacttggtctgaaaaaagctcctcggaaggcatttgagttgtcccagaggtctctg
gagtgtatagtccagttacgtgaccatggtaagactgttggagtagtcgacgcccccaaa
aagacgaaattaattcctcctccaactctttccatcaaaaataataagaagctgctgaca
agtcaggatcttcagtttcaaaggctcatgagatccagatctcatcaaaaacgagacctt
gattacaaaaatactgatactgctagaacagtgccacgcacagtacagggttctgacgta
cctgtgccagactctgatgggccagataatagaggaagtgagccacctgccaacagtaat
gaaaagcaattagcaaaatgcatgccttccaaactagaagtggcgaaagccatttccgat
cctcgggtgactgatatagcttctcttgtgaaccagtgtgagtctagagtgttaagtgga
ggagtgccaacagatgtgatatttgcttcagaggatcctgtgggtgaagacgctcccaca
ctgccatttggggaggtggcagctgtgaaagctgcagaaccagaatccagtagtgataca
gatgatgataatttattcttaacacagcatgatcctcaagatatggatctgtgctcacag
atggaaaataataaactgattgtagtgactcataaagatgctattcagagagatgattct
gtaaatcagcctcagctggtggagtctttgagtgtcacaaagtgtaagtataaagactgt
gttgaaactacaaaaaaccagggtgaatactgcccaagacactccgaagctaaagcagca
gatgatgacgtgtttcgtaaacccggcttacctctttctgtagccaggccattgagacct
actactaccaagatatttagctcaagcagtgcttcacgaacagccaatttttccaagtct
ttggaaagtaccatacttcagtcagcactaaaaaataagtcaagtggggcacagcctaat
ttgaaggtgacaccaccctcttccatagtgtctcagaagccagtggctgaggtgaaaagt
ttatgcaatatttttaattttcagactccaagcagttccagtaaacggagttataagctt
acacttagtgacagcaagcctgtgtcagcttcctctgcagtgaacattctcttgccatca
cagtctatctttgacaccttcattaaagaggtcttaaaatggaaataccaaatgtttttg
aactttgataaatgtggcgccccaccaagtctctctcaatctatctcaagacccgtgccc
gtcagatttcaagattgtgcagagtattttaatgtttttctccctttgattatattgaat
gcttttgaaacagtggcacaggaatggttcaactctccaaataaagagaatttctatcat
ttgcatttacgaaaatttccagcggactacaaaaaatactgggagtttatgatttacctg
gaggaatctgaactagctaaacaacttcatccaaaggaaaatgatctggtgtttttggtt
cctgagagactaaatagagagaagaaagatatgaacaggaatggcatgcaagatcgaaat
ggctattactgtggttatgttcataagtttcgccgtacttcagtcatgcgcagtggaaaa
gctgagtgttccttgtgcatccagacacaagataacttgccagtcagactaaatgaattc
atgaaatgtattgtaatcagttctctggtaactacacagaggaaattgaaagccatgtct
ctgttgagcagtcggaaccagttggccagagctgttctaaatccaaaccccatggatttc
tgtaccaaagacctattaactacaacatctgaaagaattattacctacttaaaagacttc
aatgaagaccagaagaaagccatagaaacagcatatgctatggtgaaacactcaccatct
gttgctaaaatatgtttgattcatggaccacctggaacaggaaaatcaaaaaccattgta
ggtctcttgtatcgattattgacagagaaccagaggaagggccattctgatgaaaacttc
aatgccaaaatcaagcaaaaccgagtcctcgtgtgtgcaccttccaatgcagctgttgat
gaacttatgaaaaaaattatcctggaattcaaagaaaaatgtaaagacaagaagaatcct
ttgggaaattgtggagatataaatttagtgcgactgggtccagaaaagtctattaataca
gaggtcctaaaatttagtttggacagccaagtcagccacagaatgaaaaaagacttgcct
tctcatattcaagaaatgcttagaaagaaagagtttctggatggtcagctcgatgaactt
tctcgtcagcgagctctgtgtcgaggtggacgagagatgcagaggctagaattagatgga
tgtattgtcaaagtttcaaaagaaaggcaagaacttgcttcgaaaattaaagaggttcag
gggcgaccacagaaaacacagaataccattatcttggagtctcatgtcatctgctgcaca
ctgagcacaagtggtggtttgctgcttgagtctgcttttcgaggacaagggggtgtcccc
tttagttgcgtcattgtggatgaggctggacagtcttgtgaagttgagacactttctcca
cttattcatcgctgcaacaaacttatcctagtaggagacccgaaacagctccctcccaca
gtcatttctatgaaagcacaggagtatggctatgaccaatcaatgatggcacgattctgc
aagctgcttgaagagaatgtggagcagaacatgattggcaggctgccgattttacagctt
accattcagtacaggatgcatccagacatatgtctcttcccttctaattatgtttataac
aaaaacttgaaaacaaatagaatgactgaaaccattcggtgttcatcagagtggccattt
cagccctacctggtgtttgatgttggagatggttcagaacgacgggataatgactcatac
ataaatgttcaagaaataaagttggtgatggaaataattaaacttattaaagacaaaaga
aaagatatttcctcccgaaatattggcataataactcattacaaggctcagaagacgatg
atccagaaggatttggagaaagaatttgataagaaaggtttattacagcccatcatgatt
ggggagtcaaggcagcaggaccctgaagcatccagtcagaagaagaagagcagtgaatgc
atgcatactagtgatgagctcgatttctccacttttacacagtccggagtctcctgcata
gagaatggtgtcacccacactgggcctgcagaagtggatacagtggatgccttccagggc
cggcaaaaagactgtataattgttacctgtgtcagggctagtgctgtgcaaggttcaatt
ggattcctggcaagcttgcaaagattgaatgtcaccattacacgagccaagtacagcctt
tttatccttggacatttgaggactctgatggaaaaccaacattggtatgaactgattcag
gatgctcaaaagcgtggggccattattaagacctgtgacccaaactatagacatgatgca
atgaaaattctgaaactgaagcctgtgctacagaggagtctgacccatcctccagccact
gccccagaggcaccgagacctcagggtggcttgcccagcaacaaactggacagtggactt
gccaagacatcttttgctgcttctctgtaccatacaccctctgatgctgtcactaaggaa
cctgaaaggccacctcttcaagaccgacttcgagatccacgactgcttaggagattggat
gctgaagccaagggaacactcctgaaaaatgcacagcctctgaactcccagctccctggg
ctagtccatctcctgggagagtctggcattcctttgtttttacacgacctgagttttatt
gtgccaccatccactgccatcgttgcccctatgaacagccataggtctcctcttcaggct
gagccaccaccggctcaccctgctgctccttccaccagtaagaggaagtacagtgaccga
gactctgggttcagtcatagaagggaatccagggacttcagtgaagaggaaagacgtggc
tctgtgactcatcacatgctgaggagtactgactggaacaggagaaggctggaacaggag
gacagcagtgctaagaagagacggtttctatag
DBGET
integrated database retrieval system
