Cricetulus griseus (Chinese hamster): 100764729
Help
Entry
100764729 CDS
T02813
Symbol
Htt
Name
(RefSeq) huntingtin isoform X2
KO
K04533
huntingtin
Organism
cge
Cricetulus griseus (Chinese hamster)
Pathway
cge05016
Huntington disease
cge05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
cge00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
100764729 (Htt)
05022 Pathways of neurodegeneration - multiple diseases
100764729 (Htt)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cge03019
]
100764729 (Htt)
04131 Membrane trafficking [BR:
cge04131
]
100764729 (Htt)
03029 Mitochondrial biogenesis [BR:
cge03029
]
100764729 (Htt)
Messenger RNA biogenesis [BR:
cge03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100764729 (Htt)
Membrane trafficking [BR:
cge04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
100764729 (Htt)
Mitochondrial biogenesis [BR:
cge03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
100764729 (Htt)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
Motif
Other DBs
NCBI-GeneID:
100764729
NCBI-ProteinID:
XP_027242935
UniProt:
A0A9J7J5N8
LinkDB
All DBs
Position
1
Genome browser
AA seq
3135 aa
AA seq
DB search
MATLEKLMKAFESLKSFQQQQQQQQQQQQQQQQQQQQQQQPPPPPPPPPQPPQPPPQGQA
PPLAPPPPPLPGPAEEPLHRPKKELSATKKDRVSHCLTICENIVAQSLRNSPEFQKLLGI
AMELFLLCSDDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAAL
WRFAELAHLVRPQKCRPYLVNLLPCLTRTSKRPEESVQETLAAAVPKIMASFGNFANDNE
IKVLLKAFIANLKSSSPTVRRTAAGSAVSICQHSRRTQYFYNWLLNVLLGLLVPVEEEHS
TLLILGVLLTLRCLVPLLQQQVKDTSLKGSFGVTRKEMEVSPSTEQLVQVYELTLHHTQH
QDHNVVTGALELLQQLFRTPPPELLQALTTPGGLGQLTVVQEEARGRGRSGSIVELLAGG
GSSCSPVLSRKQKGKVLLGEEEALEDDSESRSDVSSSAFAASVKSEIGGELAASSGVSTP
GSVGHDIITEQPRSQHTLQADSVDLSGCDLTSAATDGDEEDILSHSSSQFSAVPSDPAMD
LNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLDGADSQYLGMQIGQPQEEEEEEAA
GVLSSEVSDVFRNSSLALQQAHLLERMGHSRQPSDSSIDKLVSRDEVAEASDPESKPCRI
KGDIGQPNDDDSAPLVHCVRLLSASFLLTGEKKALVPDRDVRVSVKALALSCIGAAVALH
PESFFSKLYKVPLDTMEGAEEQYVSDILNYIDHGDPQVRGATAILCGTLVYSILSRSRLR
VGDWLGTIRTLTGNAFSLVDCIPLLQKTLKDESSVTCKLACTAVRHCVQSLCSSSYSDLG
LQLLIDMLPLKNSSYWLVRTELLETLAEIDFRLVSFLEAKAESLHRGAHHYTGFLKLQER
VLNNVVIYLLGDEDPRVRHVAAASLTRLVPKLFYKCDQGQADPVVAVARDQSSVYLKLLM
HETQPPSHFSVSTITRIYRGYSLLPSITDITMENNLSRVVAAVSHELITSTTRALTFGCC
EALCLLSAAFPVCTWSLGWHCGVPPLSASDESRKSCTVGMASMILTLLSSAWFPLDLSAH
QDALILAGNLLAASAPKSLRSSWTAEEEANSAATRQEEVWPALGDRTLVPMVEQLFSHLL
KVINICAHVLDDVTPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGEQASAPMSPKKGGET
SAASRQSDTSGPVTASKSSSLGSFYHLPSYLKLHDVLKATHANYKVTLDLQNSTEKFGGF
LRSALDVLSQILELATLQDIGKCVEEVLGYLKSCFSREPMMATVCVQQLLKTLFGTNLAS
QFDGLSSNPSKSQCRAQRLGSSSVRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQEHD
ASGWFDVLQKVSAQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQK
QVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSY
ERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELET
QKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQVADIILPMLAKQQMHID
SHEALGVLNTLFEILAPSSLRPVDMLLRSMFITPSTMASVSTVQLWISGILAILRVLISQ
STEDIVLSRIQELSFSPYLISCPVISRLREGDSNSTLGERSEGKQTKNLPEETFSRFLLQ
LVGILLEDIVTKQLKVEMSEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAATRLFTSD
GCEGSFYTLESLNARVRSMVPTHPALVLLWCQILLLINHTDHRWWAEVQQTPKRHSLSCT
KSLSPQMFGEEEEDSGSAAQLGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHIQ
DLISLSHEPPVQDFISAIHRNSAASGLFIQAIQSRCENLSAPTTLKKTLQCLEGIHLSQS
GAVLTLYVDRLLGTPFRALARMVDTLACRRVEMLLAANLQSSMAQLPVEELNRIQEHLQN
SGLAQRHQRLYSLLDRFRLSTVQDSLSPLPPVTSHPLDGDGHTSLETVSPDKDWYLQLVR
SQCWTKSDSALLEGAELVNRIPAEDMNDFMMSTEFNLSLLAPCLSLGMSEIASGQKSPLF
EAARAVTLDRVTSVVQQLPAVHQVFQPFLPTEPTAYWSKLNDLLGDATSYQSLTTLARAL
AQYLVVVSKVPAHLHLPPEKEGDTVKFVVMTLEALSWHLIHEQIPLSLDLQAGLDCCCLA
LQVPGLWGVLSSPEYVTHVCSLIHCVRFILEAIAVQPGDQLLGPESRSNTPRAVRKEEVD
SNIQNPGFITSACEMVAEMVESLQSVLALGHKRNSNLPSFLTAVLKNIVISLARLPLVNS
YTRVPPLVWKLGWSPKPGGDFGTVFPEIPVEFLQEKEILTEFIYRINTLGWTSRTQFEET
WATLLGVLVTQPLVMEQEESPPEEDTERTQIHVLAVQAITSLVLSAMTVPVAGNPAVSCL
EQQPRNKPLKALDTRFGRKLSVIRGIVEQEIQEMVSQRENTATHHSHQAWDPVPSLLPAT
TGALISHDKLLLQINSERELGNMSYKLGQVSIHSVWLGNNITPLREEEWDEEEEEEADVP
APTSPPLSPVNSRKHRAGVDIHSCSQFLLELYSRWILPSSAARKTPVILISEVVRSLLVV
SDLFTERTQFEMMYLTLTELRRVHPSEDEILIQYLVPATCKAAAVLGMDKTVAEPVSRLL
ESTLRSSHLPSQIGALHGILYVLECDLLDDTAKQLIPVVSDYLLSNLKGIAHCVNIHSQQ
HVLVMCATAFYLMENYPLDVGPEFSASVIQMCGVMLSGSEESTPSIIYHCALRGLERLLL
SEQLSRLDTESLVKLSVDRVNVQSPHRAMAALGLMLTCMYTGKEKASPGRTSDPSPATPD
SESVIVAMERVSVLFDRIRKGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQP
YPQFMATVVYKVFQTLHSAGQSSMVRDWVMLSLSNFTQRTPVAMAMWSLSCFLVSASTSP
WVSAILPHVISRMGKLEQVDVNLFCLVATDFYRHQIEEEFDRRAFQSVFEVVAAPGSPYH
QLLTCLRNVHKVTTC
NT seq
9408 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccctggaaaagctgatgaaggctttcgagtcgctcaagtcgtttcagcagcag
cagcagcaacagcagcagcagcagcagcagcagcaacagcaacagcagcagcagcagcag
ccgccaccaccaccaccgccgccgcctcagccccctcagccgccgcctcagggtcaggcg
ccaccgcttgcaccgcccccaccgccgctgcccggtccggccgaggagccgctgcaccga
ccaaagaaggaactctcagccaccaagaaggaccgtgtgagtcattgtctaacaatatgt
gaaaacatcgtggcacagtctctcagaaattctccagaatttcagaaactcttgggcatt
gctatggagctgtttctgctgtgcagtgatgatgcagaatcagatgtcaggatggtagct
gatgagtgcctcaacaaagtcatcaaagctttgatggattctaatcttccaaggctacag
ctagaactctataaggagattaaaaagaatggtgctcctcgaagtttgcgtgcagccctg
tggaggtttgctgagctggctcacctggttcgacctcaaaaatgcaggccttacctggtg
aacctacttccatgcctgacccgaacaagcaagagacctgaagaatcagttcaggagacc
ttggctgcagctgttcccaaaattatggcttcttttggaaattttgccaatgacaatgaa
attaaggttctgttgaaagctttcatagcaaatctgaagtcaagttctcccactgtccga
cggacagcagctggctcagcagtgagcatctgccagcattcccggaggacacaatacttc
tacaattggctcctaaatgtgctcctaggtctgctggttcctgtagaggaagaacattcc
actctcctgatccttggtgtgctactcacattgaggtgtctagtgcccttgctccagcag
caggtcaaggacacaagtctaaaaggcagctttggggtgacacggaaagaaatggaagtc
tctccttctacagagcagcttgtccaggtttatgaactgactttgcatcacacgcagcac
caagaccacaatgtggtgacaggggcactggagctcttgcagcagctcttccgtactcct
ccccctgaactgctacaagcactgaccacaccaggtggtcttgggcagctcactgtggtt
caagaggaggccaggggccgaggccgcagcgggagcattgtggaacttttagctggaggg
ggttcctcatgcagccctgttctctcaagaaagcaaaaaggcaaagtgctcttaggagaa
gaagaagccttggaagatgactcagagtccaggtcagatgtcagcagctccgcctttgca
gcctctgtgaagagtgaaattggtggagagctcgctgcttcttcgggtgtctccactcct
ggttctgtaggtcatgacatcatcactgaacagcctcggtcccagcacacacttcaagca
gactctgtggatttgtcaggctgtgacttgaccagtgctgctactgatggggatgaggag
gacatcttgagccacagctccagccagttcagtgccgttccatctgaccctgccatggac
ctgaatgatgggacccaggcctcctcacccatcagtgacagctctcagactaccactgaa
gggcctgattcagctgtgactccttctgacagctccgaaattgtgttagatggtgctgac
agccagtatttaggcatgcaaataggacagccacaggaggaggaagaggaggaggctgcg
ggtgtgctttccagtgaagtctcagatgttttcagaaattcttctctggcccttcaacag
gcacacttattggagagaatgggccatagtaggcaaccttctgacagcagtatagataag
cttgtatcaagagatgaagttgctgaagcaagtgacccagaaagcaagccttgccgaatc
aaaggtgacataggacagcctaatgatgatgattctgctcctctggtccattgtgtccgc
cttttatctgcttcctttttgttaactggggaaaaaaaagcactggttccagacagagat
gtgagggtcagtgtgaaggccctggccctcagctgtattggtgcagccgtggcccttcat
cctgaatctttcttcagcaaactatataaagtacctcttgacaccatggaaggtgctgag
gaacagtatgtctctgacatcttgaactacatcgatcatggagacccacaggtccgagga
gctactgccattctctgtgggaccctcgtctactccatcctcagcaggtcccggctccgt
gttggcgactggctgggcaccattagaaccctgacaggaaatgcattttctctggtggac
tgcattcctttgctacagaaaactttgaaggatgaatcttctgtcacttgcaagctggcc
tgtacagctgtgaggcactgcgtccagagtctttgcagcagcagctacagtgacttggga
ttacaactgctcattgatatgttgcctctcaagaacagctcctactggttggtaaggact
gagctgctggaaacccttgcagagattgacttcaggctggtgagttttttggaggcaaaa
gcagaaagtttacatcgaggggctcatcattatacagggtttttaaaactgcaagaacga
gtgcttaataatgtggtcatttatttgcttggagatgaagaccccagggttcgacatgtt
gctgcagcatcgctaacaaggcttgtcccaaagctgttctataaatgtgaccaaggacag
gctgatccagtagtggctgtagcaagagatcaaagcagtgtttacctgaaactcctcatg
catgagacgcagccgccatcgcacttctctgtcagcaccataaccagaatctatagaggt
tatagtttactgccaagtattacagatatcaccatggaaaacaacctctcaagagttgtt
gctgcagtttctcatgaactcattacatcaactacccgggcactcacatttggatgttgt
gaagccttgtgtctgctttcagcagcctttccagtttgcacttggagtttaggttggcat
tgtggagtgcccccgctgagtgcctctgatgagtccaggaagagctgtactgttgggatg
gcctccatgattctcaccttgctttcatcagcttggttcccattggatctctcagcccat
caggatgccttaattttagctggaaacttgcttgcggccagtgcccccaagtctctgaga
agttcttggaccgctgaagaagaagccaattcagcagccaccagacaggaggaagtttgg
cctgccctgggggatcggacactggtgcccatggtggaacagcttttctctcacctgctg
aaggtgatcaacatctgtgctcatgtcttggatgatgtgactcctggaccagcaatcaag
gcagctttgccttctctaacaaaccccccttctctaagtcctattcgacggaaagggaag
gagaaagaaccaggagaacaagcttctgctccaatgagtcccaagaaaggtggtgagacc
agtgcagcctctcgacaatcagacacctcaggacctgtcacagcaagtaaatcttcttca
ttggggagtttctaccatctcccttcctacctcaaactgcatgatgtcctgaaagccact
catgccaactataaggtcaccttagatcttcagaacagcactgaaaagtttggggggttc
ctgcgctctgccttggacgtcctctctcagattctagaactggcaacactgcaggatatt
ggaaagtgtgttgaagaggtccttggttatctgaaatcctgctttagtcgagaaccaatg
atggcaactgtctgtgttcagcagctattgaagactctctttgggacaaacttggcctca
cagtttgatggcttatcttcgaaccccagcaagtctcaatgccgagcacagcgccttggc
tcttccagtgtgaggccaggcttatatcactactgcttcatggcaccgtacacacacttc
acgcaggccttggctgatgccagtctgaggaacatggtgcaggcggagcaggagcatgat
gcctcagggtggtttgatgtactccagaaagtgtctgcccaattgaagacgaacctcaca
agcgtcacaaagaaccgtgcggataagaatgctattcacaatcacattagattatttgag
cctcttgttataaaagcattgaagcagtacaccacaacgacatctgtacagttgcagaag
caggttttggatttgctggcacagctggttcagctacgggtcaattattgtctgctggat
tcggatcaggtgttcatcggttttgtgctgaagcagtttgagtacattgaagtgggccag
ttcagggaatcagaggcaattattccaaatatatttttcttcctggtattactgtcttat
gaacgctaccattcaaaacaaatcattggaattcctaaaatcatccagctgtgtgatggc
atcatggccagtggaaggaaggctgttacacatgccatacctgctctgcagcccattgta
catgacctgtttgtgttaagaggaacaaataaagctgatgctggaaaagagcttgaaacc
cagaaggaggtggttgtgtcgatgctgttaagactcatccaataccatcaggtgctggag
atgttcatccttgtcctgcagcagtgccacaaggagaatgaggacaagtggaaacggctg
tctcggcaggttgcggacatcatcctgcctatgttagccaagcagcagatgcacattgat
tctcatgaagccctgggagtgttaaataccttgtttgagattttggctccttcctcccta
cgtcctgtggacatgcttttgcggagtatgttcatcactccaagcacaatggcatctgta
agcactgtgcagctgtggatatctggaatcctagccattctgagggttctcatttcccaa
tcaacagaagatatcgttctttctcgtattcaggaactctccttctcgccatatttaatc
tcttgtccagtaattagcaggttaagggaaggagacagtaattcaacactaggagaacgc
agtgaagggaaacaaacaaagaatttgccagaagaaacattctcaaggtttcttttacag
ctggttggtattcttttagaagacattgttacaaaacagctcaaagtggaaatgagtgaa
cagcagcatacattctactgccaagagctgggcacactgctcatgtgtctgatccacatc
ttcaaatctggaatgttccggagaatcacagcagctgccactagactcttcaccagtgat
ggttgtgaaggcagcttctatactctagagagcctgaatgcacgggtgcgatccatggtg
cccacacacccagctctggtactgctctggtgtcagatcctactgctcatcaaccacact
gaccaccgatggtgggcagaggtgcagcagacacccaaaaggcacagtctgtcctgcacg
aagtcacttagtccccagatgtttggtgaagaagaggaggattctggttcagcagctcaa
cttggaatgtgcaatagagaaatagtgcgaagaggggcccttattctcttctgtgattat
gtttgtcagaatcttcatgactcagaacacttaacatggctcattgtgaatcacattcaa
gatctgatcagcctgtctcatgagcctccagtacaagactttattagtgccattcatcgt
aattctgcagctagtggccttttcatccaggcaatccagtctcgttgtgaaaatctttca
gctccaaccactctgaagaaaacacttcagtgcttagaaggcatccatctcagccagtct
ggtgctgtgcttacactatatgtggacaggctcctgggaactcccttccgtgcgttggct
cgcatggtcgacactctggcctgtcgccgggtagaaatgcttttggctgcaaatttacag
agtagcatggcccagttgccagtggaggaactgaacagaatccaggagcacctccagaat
agtgggcttgcccaaagacaccaaaggctctattccctgctggacaggttccgactctct
actgtgcaggactcacttagccctttgcccccagtcacttcccacccactggatggggat
gggcacacatctctggaaacagtgagtccagacaaagactggtacctccagcttgtaaga
tcccagtgttggaccaaatcagattctgcactgctggaaggtgcagagttggtgaatcgc
atccctgctgaagacatgaatgacttcatgatgagcacggagttcaacctaagccttttg
gctccctgcttaagccttggcatgagtgagattgcttctggccagaagagtcctcttttt
gaagcagcccgtgcagtgactctggaccgggtgaccagtgttgttcagcagcttcctgct
gtccatcaagtcttccagcctttcctgcctacagagccaacagcctactggagcaagttg
aatgatctgcttggtgatgctacatcataccagtctctgaccacacttgctcgtgcccta
gcacaatacctggtggtggtctccaaagtgcctgctcatttgcaccttccccctgagaag
gagggggacacagtgaagtttgtggtaatgacacttgaggccttgtcatggcatttgatc
catgagcagatcccactgagtctggacctccaagccgggctagactgctgctgcctggca
ctacaggtgcctggcctctggggggtgctgtcctccccagagtatgtgacccatgtctgc
tccctcatccattgtgtgcgattcatcctggaagccattgcagtgcagcctggggaccag
cttctcggtccagaaagcaggtcaaatactccaagggctgtcagaaaggaagaagtagac
tcaaacatacaaaatcctggtttcatcacttcagcctgcgagatggtagcagagatggtg
gaatccctacagtcagtgctagccttgggccacaagaggaacagcaacttgccttcattt
ctcacggcagtgctaaagaatattgtcatcagtctggcgcgtcttcccctagtcaacagc
tatacgcgtgtgccccctctggtatggaaacttgggtggtcgcccaagcctggaggggac
tttggcacagtgttccctgagatccctgtagaattcctccaggagaaggagatcctcacg
gagttcatctatcgtatcaacaccctagggtggaccagtcgtacccagtttgaagaaact
tgggctaccctccttggtgtcctggtgactcagcccctggtgatggaacaggaggagagc
ccaccagaggaagacacagaaaggacccagatccatgtcctggctgtgcaggccatcacc
tctttagtgctcagtgcaatgactgtgcctgtggctggcaatccagctgtaagctgcttg
gaacaacagccccggaacaagcccctgaaggctctcgatacaagatttggaaggaagttg
agtgtgatcagagggattgtagaacaagagatccaagaaatggtttcccagagagagaat
actgccactcaccattctcaccaggcatgggatcctgtcccttctctgttgccagctact
acaggtgccctcatcagccatgacaagctactactgcagatcaactcagagcgggagcta
ggcaacatgagctacaagctgggccaggtatccatacactctgtgtggctggggaacaac
atcacacctctgagagaagaggaatgggatgaagaggaggaagaagaggctgatgtccct
gcaccaacgtcaccacctttgtctccagtcaattccagaaaacaccgtgctggggttgat
attcactcctgttcgcagtttctgcttgaattgtacagccgctggatcctgccatccagt
gcagccagaaagacccctgtcatcctgatcagtgaagtggttcgatctcttctcgtggtg
tcagacttattcactgaacgcacccagtttgaaatgatgtatctaacgctgacagaacta
cggagagtgcacccttcagaagatgaaatcctcattcagtacctagtgcctgccacttgt
aaggcagctgctgtccttggtatggacaaaactgtagcagagccagtcagccgcctactg
gagagcacactcaggagcagccacctccccagccagatcggagccctgcatggcatcctc
tacgtgttggagtgtgacctcttggatgacactgcaaagcagctcattccagttgttagt
gactatctgctgtccaacctcaaaggaatagcccactgcgtgaacattcatagccagcag
cacgtgctggtgatgtgtgccactgcattctatctgatggaaaactaccctctggatgtg
gggccagaattttcagcatctgtgatacagatgtgtggagtgatgctgtctggaagtgag
gaatccaccccctccatcatttaccactgtgccctccggggtctggagcgtctcctgtta
tctgagcagctctctcggttagatacagagtctttggtcaagctaagtgtggacagagtg
aatgtacaaagcccacaccgagccatggcagccctaggcctgatgctcacctgcatgtac
acaggaaaagaaaaagccagtccaggcagaacctctgaccctagccctgctacacctgac
agtgagtctgtgatcgttgctatggagcgggtatctgttctctttgataggatccgcaag
gggtttccctgtgaagccagagttgtggcaaggatcctgcctcagttcctagatgatttc
ttcccacctcaagatgtcatgaacaaagtcattggagagtttctgtccaaccagcaacca
tacccacagttcatggccactgtagtatacaaggtttttcagactctgcacagtgctggg
cagtcatccatggtcagggactgggtcatgctgtccctgtccaacttcacacaaagaact
ccagttgccatggccatgtggagcctctcctgcttccttgtcagtgcatctaccagccca
tgggtttcagcgatccttccacatgtcatcagcaggatgggcaaactggagcaagtagat
gtgaaccttttctgcctggttgccacagacttctacagacaccagatagaggaggaattc
gaccgcagggctttccagtctgtatttgaggtggtggcagcaccaggaagtccttaccac
cagctgcttacttgtttgcgaaatgtccacaaggtcaccacctgctga
DBGET
integrated database retrieval system
