Cricetulus griseus (Chinese hamster): 100772437
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Entry
100772437 CDS
T02813
Symbol
Col15a1
Name
(RefSeq) collagen alpha-1(XV) chain isoform X2
KO
K08135
collagen type XV alpha
Organism
cge
Cricetulus griseus (Chinese hamster)
Pathway
cge04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
cge00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100772437 (Col15a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cge00535
]
100772437 (Col15a1)
Proteoglycans [BR:
cge00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
100772437 (Col15a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
100772437
NCBI-ProteinID:
XP_027258933
UniProt:
A0A9J7FJC7
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All DBs
Position
2:complement(96103706..96210576)
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AA seq
1486 aa
AA seq
DB search
MQGIQASVLGVAGSDFGCSGVEGRRGRGEVRRGPAARWGTARGGEQGAAESGFSARVTQA
RAGGSRDPAVAAERRLCSAGEVELGSGGCTMAPRRTAQSQRPRWLLSIISSALLSAVLQT
RSATGSAAQDHLDLTELIGVPLPSSVSFVTGYGGFPAYSFGPGANVGRPARTLIPPTFFR
DFAISVAVKPSSSQGGVLFAVTDAFQKVIYLGLRLSRVEDGYQRVILYYTEPGSHVSHEA
AAFSVPVMTNRWNRFAVTVQGEEVALLMDCEEHSHVLFQRSARPLMFEPSAGIFVGNAGA
TGLERFTGSIQQLTIYSDPRTPEELCEAQESSASGEASGLQEMDEVAEIMEAVTYTQAPP
KEVHVDPISMPPTLSSPAEDTELSGEPVPEGTPETNLSIIGQSSPEQGSGEILNDTLEVL
AVDGDPSTDGGSGDGALLNVTDGQVLSATATEEAKVPVTTTLEAEIGSMPTGSPTLAVST
QNTREEATLDPDSEENLATAASGDGEVPTSTAGDAEAGTMSTTEPTLSMLTQKPREEATL
GPNGEEWLTPAVSKVPLGAFEEEEASGTAIESLDAFTPTMVLEQASGTLTDIQDALTPPV
VLEQASGTLTDIQDALTPPVVLEQGSRSPTDTQATLAPTVAPEQVFTAAPTDGEGLVAST
EEAEEEGSDSTPPSGPPLPTPTVIPERQVTLVGVEAEGSGHVWGLDVGSGSGDIVDNEDL
LRGPPGPPGPPGTPGIPGKPGTDVFMGPPGSPGEDGAAGEPGPQGPEGQPGLDGASGKPG
MKGEKGARGPNGSVGEKGDPGNRGLPGPPGKNGQVGTPGVMGPPGPPGPPGPPGPGCTTE
LGFEDIEGSGDIQLLSKPRVLGTASPSGPKGEKGEQGPKGERGMDGTSTVGPPGPRGPPG
RVEVLSSSLINITNGSMNFSDIPELVGPPGPDGVPGLPGFPGPRGPKGDTGVPGFPGLKG
EQGEKGEPGAILTGDIPLEMVKGRKGEPGMHGSPGPMGPKGPPGHKGEFGLPGRPGRPGL
NGLKGAKGDRGIMMPGPPGLPGPPGPPGPPGAVVNIKGAVFPIPARPHCKTPVGTAHPGD
PELVTFHGVKGEKGSWGLPGSKGEKGDQGAQGPPGPPVDPVYLRHFLHSLKRENGDAAIR
GESSNNLFVSGPPGLPGHPGLVGQKGEAVVGPQGPPGIPGLPGPPGFGRPGVPGPPGPPG
PPGPPAILGAAVALPGPPGPPGQPGLPGSRNLVTALSDMGDMLQKAHLVIEGTFIYLKDS
AEFFIRVRDGWKKLQLGELIPIPADSPPPPALSSNPYQPKPPLNPILSANYERPVLHLVA
LNTPVAGDIRADFQCFQQARAAGLLSTFRAFLSSHLQDLSTVVRKAERFSLPIVNLKGQV
LFNNWDSIFSGDGGQFNTHIPIYSFDGRDVMTDPSWPQKVIWHGSNPRGVRLVDKYCEAW
RTTDMAVTGFASPLSTGKILDQKAYSCANRLIVLCIENSFMTDARK
NT seq
4461 nt
NT seq
+upstream
nt +downstream
nt
atgcaagggatccaggctagtgtgctgggtgtggccgggagcgacttcggctgctctggg
gtggagggaagaagggggcgtggggaggttcggcggggaccggcggcgaggtggggcacc
gcgcgtgggggagagcagggcgcggcggagtcgggtttcagtgcgcgggtgactcaggcg
cgggcgggcggcagccgggatcccgccgtcgccgccgagcgccgcctttgttccgcgggc
gaagtggagctggggtcaggcggctgcaccatggcacccaggaggacggcgcagagccag
cgcccgcggtggctgctctccatcatctcctccgcgctgctctccgccgtactgcagaca
cgctccgcaacagggtcagctgcccaggaccatctggacctcacagagctcattggtgtt
ccattaccctcatctgtgtcctttgtcaccggctatggtggtttcccggcttacagcttt
gggcctggtgccaatgttggccgcccagccaggaccctcatcccacctaccttcttcagg
gacttcgccattagtgtggcggtgaagcccagtagttcccaaggaggtgtgctcttcgct
gttaccgacgctttccagaaagtcatctacctgggcctgcggctttccagggtagaggac
ggctaccagcgggttatcctgtactacacggaaccaggctcccatgtgtcccatgaagcg
gctgccttttcagtgcctgtgatgaccaacaggtggaatcgttttgctgtgactgtccag
ggcgaagaagtggcccttctcatggactgtgaggaacacagccacgtccttttccagcga
tctgcccggcctctgatgttcgagcccagtgccgggatatttgtaggcaatgcaggagcc
acagggctggagagatttacgggctccatacagcagcttaccatctactctgaccccagg
acccccgaggagctgtgtgaagcccaagagtcctcggcatctggagaggccagtgggctt
caggagatggatgaagttgctgagatcatggaagctgtcacctatactcaagctccgcct
aaagaagtacacgttgatcccataagcatgccacctactttatcctctcctgctgaggac
acggagctttctggtgaacctgtgccagaaggaaccccagaaaccaacttgagcatcatt
gggcaaagcagccctgagcaagggtctggtgagattctgaatgacacactggaggtcctt
gctgtggatggggaccccagtactgatggtggttcaggggatggggccttgttgaatgtc
actgatggtcaggtattatcagcaacagcaactgaggaggccaaggtacctgtcaccact
accctggaagcagagattggcagtatgcctactgggagccccaccctggctgtgtccacc
caaaacaccagggaagaggccacactggatccagatagtgaagaaaatctagcaactgca
gcatcaggggatggcgaggtgcccaccagcactgctggggatgcagaggctggcaccatg
tctactacagagccaaccctgtccatgctaacccagaagccaagagaagaggccactttg
ggtccaaatggtgaagaatggttaactccagctgtgtctaaagtgccccttggtgctttt
gaggaagaggaagccagcgggactgccattgagagcctggatgccttcacgcccacaatg
gtccttgagcaagccagtgggacccttacagacatccaggatgctctcacacccccagtg
gtcctggagcaagccagtgggacccttacagacatccaggatgctctcacacccccagtg
gtccttgagcaaggcagcaggagtcctacagacacccaggccactctcgcacccacagtg
gctcctgagcaagtgtttactgctgcaccgacagatggagaaggcctggtggcctccaca
gaggaagctgaagaggaggggtctgacagcacacctcccagtgggcctcctcttcctaca
cccacagttattcctgagaggcaggtcactctggtaggagtggaggctgagggctcaggc
catgtttggggcttggatgtgggctcaggctctggagacattgtggacaatgaggatctg
ttgagaggtcctccgggacctccaggcccccctggaacacctgggattccaggaaaacca
ggaactgatgttttcatgggaccccctggctctcctggagaggacggagctgctggtgag
ccaggacctcagggccctgagggacagcctggacttgatggagcctctggcaagcctggg
atgaaaggagagaagggagcaagaggacctaatggctcggtcggtgagaagggagaccct
ggcaatcgaggcttgccagggcccccagggaaaaatggacaagttggcactcctggagtc
atgggaccaccagggcctcctggaccccctggacccccaggccctggatgtacaacagaa
cttggatttgaggacatcgaaggctcgggggacatccagctgctgagcaaacccagagtc
ttggggacagcttctccaagtggtcccaaaggagaaaaaggagagcaaggacccaagggc
gaacggggaatggacggaaccagtactgtggggccccctgggcccaggggaccgcctggg
cgtgtcgaggtcctgtccagttctttgatcaacatcactaatggatccatgaatttctcc
gacattcctgagcttgtgggacctccggggccagatggtgtgcccgggctaccaggattt
ccaggccccagaggaccaaaaggtgacaccggtgtgcctggattcccaggtctaaaagga
gaacagggcgagaagggagagccaggtgcgatactgacaggagacattcctctggaaatg
gtgaaggggagaaagggtgaacctggaatgcatggatccccaggacccatgggacctaag
ggaccaccaggacataaaggagaatttggcctccccggacgacctggtcgcccaggattg
aatggtctcaagggtgccaaaggagatcgagggatcatgatgccaggtccacctggccta
cctggacccccaggacccccaggaccccctggagctgtggttaacatcaaaggtgctgtt
ttcccaatacctgcccgaccacactgcaaaacgccagttggtactgctcaccctggtgac
ccagagcttgtcactttccacggtgttaaaggagagaaagggtcctggggtcttcctggt
tcaaaaggagaaaagggggaccaaggagcccaaggaccaccaggccctccggttgatcca
gtttacctgagacattttctccacagcttgaagagagagaatggagatgcagcaatcaga
ggagagtccagcaacaatctctttgtctctgggcctccaggcctaccaggacatccaggc
ctggttggacagaaaggagaggctgttgtggggccccagggccccccaggaattccaggc
ctgcctgggccacctggctttgggagacctggtgtccctggaccaccaggaccccctggg
ccaccaggacctcctgccatcctgggtgcagctgtggcccttccaggcccacctggccct
ccgggacagccaggactcccgggatccagaaacttggtcacggcactcagcgacatgggt
gacatgctgcagaaagctcacttggtcatagaagggacatttatctacctgaaggacagt
gcagaattcttcattcgtgtccgagatggttggaaaaaattacagttgggagaactgatc
cccattcctgctgacagtcccccaccaccagcactttctagcaatccataccagccaaag
cctccactgaaccccattttaagtgccaattatgagaggcctgttctgcatctggttgct
ctgaacacaccagtggctggggacatccgagctgatttccagtgcttccagcaggcccgg
gcagcaggactgctgtccaccttcagagctttcctgtcatcccacttgcaggatctctcc
acagttgtgaggaaagcagagagattcagccttccaattgtgaacctcaagggccaagtg
ctttttaacaattgggactcaatattttctggtgatggaggtcagttcaacacccacatt
ccaatatattcttttgatggccgagacgtgatgaccgatccttcttggccccagaaagtc
atttggcatggatccaacccccgaggtgtccgtcttgtggataagtactgtgaagcctgg
cgaaccacagacatggcagtaacgggatttgcctccccactgagcacagggaagattctg
gaccagaaagcttatagctgtgctaataggctaattgtcctgtgtattgaaaacagtttc
atgacagacgctaggaagtaa
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