Cricetulus griseus (Chinese hamster): 100774137
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Entry
100774137 CDS
T02813
Symbol
Prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X10
KO
K12821
pre-mRNA-processing factor 40
Organism
cge
Cricetulus griseus (Chinese hamster)
Pathway
cge03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cge00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100774137 (Prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cge03041
]
100774137 (Prpf40a)
Spliceosome [BR:
cge03041
]
Complex A
U1 snRNP components
U1 related factors
100774137 (Prpf40a)
Complex B
100774137 (Prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
100774137
NCBI-ProteinID:
XP_027276222
UniProt:
A0A9J7G865
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All DBs
Position
6:121194120..121235520
Genome browser
AA seq
1036 aa
AA seq
DB search
MQATPSEAEAGGESPQSCASVARSDWTAGKPVSLLAPLIPPRSSGQPLPFGPSGRQPLRS
LLVGMCSGSGRRRSSLSPTMRPGTGAERGGLMVSEMESQPPSRGPGDGERRLSGSNLCSS
SWVSADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMP
GMMSSVMSGMMMSHMSQASMQPSLPPGVNSMDVAAGAASGAKSMWTEHKSPDGRTYYYNT
ETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGY
QNTIVAGGLITKSNLHAMIKAEESSKQEECTTTSTAPVPATEIPTTMSTMAAAEAAAAVV
AAAAAAAAAANANTSTTPTNTVGSVPVAPEPEVTSIVATAVDSENTVTISNEEQAQIANT
TAIQDLSGDISSNTGEEPTKQETVTDFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLK
EKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKE
SFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQ
LRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHI
RALEKEEEEEKQKTLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIR
FTNMLGQPVFSLGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVA
IISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQAAPPI
ELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKH
HRKRSRSRSGSDSDDDDSHSKKKRQRSESHSASEHSSSAESERSYKKSKKHKKKSKKRRH
KSDSPESDPEREKDKKDKDRESEKDRSRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGE
LEKRRRTLLEQLDDDQ
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgacgccgagcgaggctgaggcggggggcgaatcgccgcagagctgcgcttcc
gtagcgcgctctgattggacagccgggaagcctgtcagtttattggccccgctgatcccg
ccccgtagctcagggcagcctttaccctttggccccagcgggcgccagccactcagatcg
cttcttgttggtatgtgtagcggcagtggccgccgacggagcagtctgagcccgacgatg
aggccggggactggagccgagcgtggaggcctcatggtgagtgaaatggagagccaacct
ccctcgcggggtcccggggacggggagcggagattgtccggctcaaacctgtgctccagt
tcttgggtctctgctgacggcttcctgaggagacggccctcgatggggcatcctggcatg
cattatgcaccaatgggaatgcaccctatgggtcagagagcaaacatgcctcctgtacct
catggaatgatgccacagatgatgccccctatgggagggcctccaatgggacaaatgcct
ggaatgatgtcttcagtaatgtcagggatgatgatgtctcatatgtctcaggcttccatg
caaccttccttaccgcctggagtaaatagtatggatgtagcagcaggtgcagcatctggt
gcaaaatcaatgtggacagaacataaatcaccggatggaaggacttattattacaatact
gaaacaaaacagtctacctgggaaaaaccagatgatctcaaaacacctgctgagcaactc
ttatctaaatgcccatggaaagagtacaaatctgattctgggaagccttattactataat
tctcaaacaaaagagtcccgctgggccaaacccaaggaacttgaggatcttgaaggatac
cagaataccattgttgctggaggtcttattacaaaatcaaacctgcatgctatgattaaa
gctgaagaaagcagcaagcaagaagaatgtactacaacatcaacagccccagttcctgca
acagaaattcctaccactatgagcaccatggctgctgcagaagcagcagctgctgttgtt
gcagctgctgcagctgctgcagcagctgctaacgccaatacttccaccactcctactaat
actgtgggaagtgttccagttgctcctgagcctgaagttacttccattgttgctactgct
gtagatagtgaaaatacagtaactatatccaatgaagaacaagcacagattgctaatacc
acagctattcaagatctaagtggtgacatatccagtaatactggagaggaaccaactaaa
caagaaactgtaactgattttactcctaaaaaagaagaggaagagagccaaccagcaaaa
aaaacatatacttggaatacaaaggaggaggcaaagcaagcatttaaagaattattgaaa
gaaaagcgggtaccttccaatgcttcatgggaacaagctatgaaaatgatcattaatgat
cctcggtacagtgctttagcaaagctgagtgagaaaaagcaggcctttaatgcctataaa
gtccagaccgagaaagaggaaaaagaagaagcaagatcaaaatacaaggaagctaaggaa
tcctttcagcgttttcttgaaaatcatgagaaaatgacttccacaaccagatacaaaaaa
gccgaacagatgtttggggagatggaggtttggaatgctatatcagagcgtgatcgtctt
gaaatctatgaagatgttttgttcttcctctcaaaaaaagaaaaggaacaagctaagcag
ttacgaaagagaaactgggaagccttaaaaaacatacttgacaatatggctaatgttaca
tactctactacttggtctgaagcccaacaatatctgatggataatccaacatttgcagag
gatgaagagttacagaacatggataaagaagatgcattaatatgctttgaggaacacatc
cgggctttagaaaaggaagaggaagaagaaaaacagaagactttgttgagagagaggagg
cggcagcgtaaaaatagggaatcttttcagatatttttagatgaattgcatgagcatgga
caactgcattctatgtcctcttggatggaactgtatccaactattagttctgatattagg
ttcactaatatgcttggtcagccggttttttcattaggatcaactgcacttgatcttttc
aagttttatgttgaagatcttaaagcacgttatcatgatgaaaagaagataataaaagac
attctgaaggataaaggatttgtagttgaagtaaatactacctttgaagactttgtggca
ataatcagttcaacaaaaagatcaactactttggatgctggaaatatcaagttggctttc
aatagtttactagaaaaggcagaagctcgggaacgtgaaagagaaaaggaggaagctcgg
aaaatgaaaagaaaagagtctgcatttaagagtatgttgaaacaagctgctcctccaata
gaactggatgctgtctgggaagacatccgggagagatttgtaaaagaaccagcatttgag
gacataactctagaatctgaaagaaaaagaatatttaaagatttcatgcatgtgcttgag
catgaatgtcaacatcatcattcaaagaacaagaaacattctaagaaatctaaaaaacac
cataggaaacgttcccgctctcgatcggggtcagattcagatgatgatgacagccattcg
aagaaaaaaagacagcgatcagagtcgcattctgcttcagaacattcttctagtgctgaa
tctgagagaagttataagaaatcaaaaaaacataagaagaaaagcaaaaagaggagacat
aaatctgactctccagaatcagatcctgaaagagagaaggataaaaaagataaagatcgg
gaaagtgaaaaagacagaagtagacagagatcagagtcaaaacacaaatcacctaagaaa
aagactggaaaggactctggtaactgggatacttctggcagtgaactgagtgaaggggaa
ttagaaaagcgcagaagaacccttttggagcaactggatgatgatcaataa
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