Clostridium gelidum: psyc5s11_05580
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Entry
psyc5s11_05580 CDS
T08447
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cgel
Clostridium gelidum
Pathway
cgel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
psyc5s11_05580 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgel03021
]
psyc5s11_05580 (rho)
03019 Messenger RNA biogenesis [BR:
cgel03019
]
psyc5s11_05580 (rho)
Transcription machinery [BR:
cgel03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
psyc5s11_05580 (rho)
Messenger RNA biogenesis [BR:
cgel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
psyc5s11_05580 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
OB_RNB
Spore_III_AA
AAA
NACHT
AAA_22
AAA_25
Motif
Other DBs
NCBI-ProteinID:
BCZ44491
UniProt:
A0ABM7SZV4
LinkDB
All DBs
Position
628918..630528
Genome browser
AA seq
536 aa
AA seq
DB search
MTKQEYESMTLINLKDIAKNLGVKNISKYKKNELVEEILKTSVNFVEKDGVILKENIAPK
IAEKPERKELIPNTTVKPERKELIPNTTVKPERKELIPNTTVKPERKELIPNTTVKPERK
ELIPNTTVKRDSNEVSRAINNIEGNTANTDAENIEKKEQLKEMIDESSVEKGILEILENN
SFGFLRCKNYLTSSEDIYVSPSQIRRFNLRTGDEVEGKVRRAKETEKFKALLFVQKVNGE
HPEKAAGRKYFETLTPIYPKERLRLETTDRNDLSSRLMDIICPIGKGQRGLIVAPPKAGK
TTLLKKVAQNISLNYPDIKLIVLLIDERPEEVTDMKRSINGDVVYSTFDEEPQNHAKVAQ
MVLERAKRMVEQGKDVFILMDSITRLSRAYNLTINPTGRTLSGGLDPGALIMPKKFFGAA
RNIEEGGSLTILATALVDTGSRMDDMIFEEFKGTGNMEVHLDRRLQERRIFPAIDIYKSG
TRKEDLIVSKEELEVSFAIRQTMYRDKNGDNVTENLINMLSKNRDNKEFIDTYLKK
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaaacaagaatatgaaagcatgactttaataaatttaaaagacattgctaaaaac
ttaggtgttaaaaatatatctaaatataagaaaaatgaattggtagaagagatattgaag
acttctgttaattttgtggaaaaagatggtgtgatattaaaagaaaatatagctcctaaa
attgcagaaaaacctgaaagaaaagaattaataccaaatactacggtaaaacctgaaaga
aaagaattgataccgaatacaaccgtaaaacctgaaagaaaagaattaataccaaatact
acggtaaagcctgaaaggaaagaattgataccgaatacaaccgtaaaacctgaaagaaaa
gaattgataccaaatacaacagtaaaaagagatagtaatgaagtttcaagagcaattaat
aatatagaaggaaatacagcaaatactgatgctgaaaacatagaaaaaaaagaacaattg
aaagaaatgatagatgaatctagcgttgaaaaaggaattttagaaattttagaaaataat
agttttggttttttaagatgtaaaaattacttgactagcagtgaggatatttatgtttct
ccatcccaaattagaaggtttaatttaagaacaggggatgaagttgaaggtaaggtaaga
cgagcaaaagaaactgaaaaatttaaagctcttttatttgttcaaaaagttaatggggaa
catccagaaaaagctgcaggtagaaaatactttgaaactttaacacccatatatccaaaa
gaaagacttagattagaaacaactgatagaaatgatttatcatctagattaatggatata
atttgtcctataggtaaaggacaaagagggctaatagtagcacctcctaaggcaggaaaa
actactttgttaaaaaaagtagctcaaaatatatctttaaattatcctgatattaaatta
atagtattacttatagacgaaagaccagaagaagttacggatatgaagagatctataaat
ggagatgtagtttattctacttttgatgaagaaccacaaaatcatgctaaggtagctcaa
atggttttagaaagagctaagagaatggtagaacaaggaaaagatgtttttattctcatg
gatagtataactagattatcaagagcatataacttaacaataaatccaactggtagaaca
ttatctggtggacttgatccaggagcacttataatgcctaaaaaattctttggagcagca
agaaatattgaagaaggtggaagtttaacaatacttgcaactgcacttgttgacactggt
tcaagaatggatgatatgatatttgaagaatttaaaggaacaggtaatatggaagttcat
ttagatagaagattacaagaaagaagaattttccctgctatagatatatataaatcagga
actagaaaagaagatttaattgtatctaaagaagaactagaagtatcgtttgccataaga
caaacaatgtatagagataaaaatggagataatgttacagagaatcttattaatatgcta
tctaaaaaccgtgataacaaagaatttatagatacttacttgaaaaaatag
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